View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_3 (Length: 779)
Name: NF6860_low_3
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 20 - 765
Target Start/End: Complemental strand, 31346871 - 31346126
Alignment:
| Q |
20 |
catttaaccctatttgcctgagttaaaaatgccccccttacttactcctaaattgcacataacaaagaaattgttacaaaacatgtaccaagtctacttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346871 |
catttaaccctatttgcctgagttaaaaatgccccccttacttactcctaaattgaacataacaaagaaattgttacaaaacatgtaccaagtctacttt |
31346772 |
T |
|
| Q |
120 |
caaacaagaatataagattcataatcatgtatttcgaagatcccaaatatgatgcagaactatcattgattagtgggactaaaattgagaatctaagaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| || ||| |
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| T |
31346771 |
caaacaagaatataagattcataatcatgtatttagaagatcccaaatatgatgcagaacaatcattgattactggaactaaaattgagaatcgaataga |
31346672 |
T |
|
| Q |
220 |
ttaaggtttccattatctacnnnnnnnaaatatgtcttaatattgagcagtgttctgtcctcaacataacttgatcaaccaataaattctcataagaatg |
319 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346671 |
ttaaggtttccattatctacttttttgaaatatgtattaatattgagcagttttctgtcctcaacataacttgatcaaccaataaattctcataagaatg |
31346572 |
T |
|
| Q |
320 |
tgatatacatccaatctcatctatctatattctaataaaagtgaaattgcatacatattaaatttcttattgattattcttcatactaacttgagcactt |
419 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31346571 |
tgatatacatccaatcttatctatctatattctaataaaagtgaaattgcatacatattaaatttcttattgattattcttcatactgacttgagcactt |
31346472 |
T |
|
| Q |
420 |
aacaaattttcttttattatctaggggtccagaaatgcttcccaaggcctttgctttctccctcaaaacaaatttttgtatcttacctgttgaagttttc |
519 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31346471 |
aacaaattttcttttacattctaggggtccagaaatgcttcccaaggcctttgctttctccctcaaaacaaacttttgtatcttacctgttgaagttttc |
31346372 |
T |
|
| Q |
520 |
ggcatatcttgaaaaatgactgtttttggagccatgaaatgcggcaaacgatctctacaaaagtttattatttcttgaacatctgcatcaaacccgtctt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346371 |
ggcatatcttgaaaaatgactgtttttggagccatgaaatgcggcaaacgatctctacaaaagtttattatttcttgaacatctgcatcaaacccgtctt |
31346272 |
T |
|
| Q |
620 |
tcaatttcaaatacgcacaaggagtttggccccatagatcatcaggtctagcaacaaccgcagcctctaagaccgctggatggctatacaaaaccgtttc |
719 |
Q |
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| T |
31346271 |
ttaatttcaaatacgcacaaggagtttggccccatagatcatcaggtctagcaacaaccgcagcctctaagaccgctggatggctatacaaaaccgtttc |
31346172 |
T |
|
| Q |
720 |
tacctcgattgagctgatgttttctcccccagatactatgatgtcc |
765 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31346171 |
tacctcgattgagctgatgttttctcccccagatactattatgtcc |
31346126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 457 - 758
Target Start/End: Complemental strand, 31317739 - 31317438
Alignment:
| Q |
457 |
cttcccaaggcctttgctttctccctcaaaacaaatttttgtatcttacctgttgaagttttcggcatatcttgaaaaatgactgtttttggagccatga |
556 |
Q |
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|||||||| ||||| ||||||||||| |||| | | ||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||| |
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| T |
31317739 |
cttcccaaagccttggctttctcccttaaaatatacttttgtatcttacctgttgaagtctttggcatatctagaaaaatgactgttttaggagccatgt |
31317640 |
T |
|
| Q |
557 |
aatgcggcaaacgatctctacaaaagtttattatttcttgaacatctgcatcaaacccgtctttcaatttcaaatacgcacaaggagtttggccccatag |
656 |
Q |
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| || |||||||| || ||||||||| |||||||||||| ||| | ||||||||| ||||||| |||||| | |||||||||||||| ||||| | |
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| T |
31317639 |
agtgaggcaaacgttccctacaaaaggcgattatttcttgagcattttgatcaaacccctctttcagcttcaaaaaagcacaaggagtttgaccccaatg |
31317540 |
T |
|
| Q |
657 |
atcatcaggtctagcaacaaccgcagcctctaagaccgctggatggctatacaaaaccgtttctacctcgattgagctgatgttttctcccccagatact |
756 |
Q |
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|||||| || | ||||| || || ||||| | || || ||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
31317539 |
atcatctggccgggcaactactgcggcctcaagaactgccggatgactatacaaaacagtttctacctcgaccgagctaatgttttctcccccagatact |
31317440 |
T |
|
| Q |
757 |
at |
758 |
Q |
| |
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|| |
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| T |
31317439 |
at |
31317438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 31379614 - 31379493
Alignment:
| Q |
27 |
ccctatttgcctgagttaaaaatgccccccttacttactcctaaattgcacataacaaagaaattgttacaaaacatgtaccaagtctactttcaaacaa |
126 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| |||||||| ||| ||| |||| | |||||||||||||| |||||||||||||||||| |||| |
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| T |
31379614 |
ccctatttccctgagttaaaaatgccccc-ttactcactcctaatttgtacaaaacatataaattgttacaaaatatgtaccaagtctacttttcgacaa |
31379516 |
T |
|
| Q |
127 |
gaatataagattcataatcatgt |
149 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
31379515 |
gaatataagatttataatcatgt |
31379493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 31399224 - 31399108
Alignment:
| Q |
27 |
ccctatttgcctgagttaaaaatgccccccttacttactcctaaattgcacataacaaagaaattgttacaaaacatgtaccaagtctactttcaaacaa |
126 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||| |||||| |
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| T |
31399224 |
ccctatttgcctgagttgaaa-tgccccccttacttacacctaaattgtgcatat-----aaattgttacaaaatatgtaccaagtctacttttaaacaa |
31399131 |
T |
|
| Q |
127 |
gaatataagattcataatcatgt |
149 |
Q |
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||||||||||||||||||||||| |
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| T |
31399130 |
gaatataagattcataatcatgt |
31399108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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