View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_31 (Length: 391)

Name: NF6860_low_31
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_31
NF6860_low_31
[»] chr3 (28 HSPs)
chr3 (76-233)||(8578714-8578860)
chr3 (296-351)||(45227277-45227332)
chr3 (295-352)||(5938738-5938795)
chr3 (295-352)||(19480035-19480092)
chr3 (301-352)||(18111592-18111643)
chr3 (295-352)||(5938805-5938862)
chr3 (295-352)||(5938872-5938929)
chr3 (295-352)||(18111525-18111582)
chr3 (295-352)||(19384283-19384340)
chr3 (295-352)||(28034677-28034734)
chr3 (311-352)||(28034744-28034785)
chr3 (297-352)||(19441070-19441125)
chr3 (311-352)||(5835636-5835677)
chr3 (295-352)||(5938939-5938996)
chr3 (295-352)||(18111458-18111515)
chr3 (295-352)||(19384221-19384278)
chr3 (311-352)||(19441137-19441178)
chr3 (311-352)||(28034810-28034851)
chr3 (320-352)||(14521046-14521078)
chr3 (312-352)||(19384107-19384147)
chr3 (313-352)||(29897129-29897168)
chr3 (188-296)||(8553460-8553561)
chr3 (258-296)||(8584154-8584192)
chr3 (311-352)||(5939006-5939047)
chr3 (43-76)||(8578423-8578456)
chr3 (320-352)||(14521112-14521144)
chr3 (320-352)||(19479993-19480025)
chr3 (320-352)||(29897074-29897106)
[»] chr6 (23 HSPs)
chr6 (295-352)||(5249991-5250048)
chr6 (295-355)||(28145227-28145287)
chr6 (295-352)||(28145163-28145220)
chr6 (296-352)||(26620431-26620487)
chr6 (296-352)||(26726410-26726466)
chr6 (295-352)||(31113201-31113259)
chr6 (311-352)||(6406612-6406653)
chr6 (295-352)||(28145096-28145153)
chr6 (311-352)||(31113150-31113191)
chr6 (312-352)||(34255591-34255631)
chr6 (310-352)||(5250075-5250117)
chr6 (310-352)||(29934548-29934590)
chr6 (320-352)||(26620388-26620420)
chr6 (320-352)||(26726367-26726399)
chr6 (320-352)||(29934624-29934656)
chr6 (320-352)||(33296088-33296120)
chr6 (320-352)||(34255467-34255499)
chr6 (320-352)||(34255533-34255565)
chr6 (320-352)||(34255665-34255697)
chr6 (310-348)||(26620314-26620352)
chr6 (310-348)||(26726227-26726265)
chr6 (320-352)||(26726301-26726333)
chr6 (320-352)||(28145297-28145329)
[»] scaffold0046 (2 HSPs)
scaffold0046 (295-352)||(90495-90552)
scaffold0046 (320-352)||(90630-90662)
[»] chr8 (19 HSPs)
chr8 (295-352)||(3165849-3165906)
chr8 (295-352)||(25336617-25336674)
chr8 (295-352)||(3165982-3166039)
chr8 (295-350)||(25336552-25336607)
chr8 (295-352)||(3165916-3165972)
chr8 (295-352)||(5557903-5557959)
chr8 (295-352)||(25336489-25336545)
chr8 (295-352)||(5557837-5557893)
chr8 (295-352)||(20810385-20810442)
chr8 (296-352)||(3165783-3165839)
chr8 (320-352)||(5557771-5557803)
chr8 (320-352)||(20810343-20810375)
chr8 (320-350)||(5557707-5557737)
chr8 (310-352)||(5558036-5558078)
chr8 (321-350)||(3166075-3166104)
chr8 (319-352)||(21542079-21542112)
chr8 (311-352)||(25336684-25336725)
chr8 (320-352)||(26082049-26082081)
chr8 (320-352)||(26082117-26082149)
[»] chr4 (33 HSPs)
chr4 (298-352)||(31663564-31663618)
chr4 (295-352)||(5578236-5578293)
chr4 (310-352)||(4852584-4852626)
chr4 (310-352)||(4852653-4852695)
chr4 (295-352)||(6735363-6735421)
chr4 (295-352)||(1505993-1506050)
chr4 (311-352)||(13713189-13713230)
chr4 (295-352)||(31663427-31663484)
chr4 (310-354)||(5599995-5600039)
chr4 (295-352)||(1506126-1506183)
chr4 (304-349)||(5578441-5578486)
chr4 (295-352)||(5599931-5599987)
chr4 (311-352)||(13713122-13713163)
chr4 (311-352)||(13713322-13713363)
chr4 (295-352)||(14190501-14190557)
chr4 (311-352)||(31663308-31663349)
chr4 (311-352)||(31663376-31663417)
chr4 (320-352)||(1506060-1506092)
chr4 (320-352)||(1506193-1506225)
chr4 (320-352)||(5599799-5599831)
chr4 (320-352)||(5599865-5599897)
chr4 (320-352)||(5909076-5909108)
chr4 (320-352)||(5909142-5909174)
chr4 (320-352)||(13702629-13702661)
chr4 (312-352)||(13713256-13713296)
chr4 (310-349)||(14190570-14190609)
chr4 (301-352)||(31663229-31663280)
chr4 (295-350)||(31663494-31663549)
chr4 (310-352)||(1506259-1506301)
chr4 (310-352)||(13713389-13713431)
chr4 (295-340)||(6735431-6735476)
chr4 (320-352)||(4852723-4852755)
chr4 (320-352)||(5578327-5578359)
[»] scaffold0927 (2 HSPs)
scaffold0927 (295-352)||(3644-3701)
scaffold0927 (295-352)||(3577-3634)
[»] scaffold0043 (3 HSPs)
scaffold0043 (295-352)||(69747-69804)
scaffold0043 (295-354)||(69814-69873)
scaffold0043 (310-352)||(69695-69737)
[»] chr7 (24 HSPs)
chr7 (295-352)||(3078555-3078612)
chr7 (295-352)||(3081347-3081403)
chr7 (295-352)||(15695427-15695484)
chr7 (295-352)||(15702407-15702464)
chr7 (295-352)||(21958537-21958594)
chr7 (310-352)||(3081140-3081182)
chr7 (295-352)||(4341296-4341353)
chr7 (295-352)||(21958470-21958527)
chr7 (310-354)||(48478354-48478398)
chr7 (310-352)||(3078650-3078692)
chr7 (310-352)||(42785902-42785944)
chr7 (295-352)||(34456446-34456503)
chr7 (295-352)||(42785954-42786010)
chr7 (295-352)||(48478290-48478346)
chr7 (304-352)||(3078497-3078545)
chr7 (320-352)||(4341230-4341262)
chr7 (320-352)||(4341429-4341461)
chr7 (320-352)||(34456338-34456370)
chr7 (320-352)||(34456404-34456436)
chr7 (320-352)||(48477962-48477994)
chr7 (320-352)||(48478028-48478060)
chr7 (320-352)||(48478094-48478126)
chr7 (320-352)||(48478224-48478256)
chr7 (295-352)||(4341363-4341419)
[»] chr2 (13 HSPs)
chr2 (295-352)||(31346814-31346871)
chr2 (296-350)||(31346934-31346988)
chr2 (295-352)||(31314999-31315056)
chr2 (311-352)||(31315066-31315107)
chr2 (311-352)||(31315136-31315177)
chr2 (295-352)||(31347067-31347124)
chr2 (295-352)||(31347000-31347057)
chr2 (320-352)||(2743325-2743357)
chr2 (320-352)||(2743391-2743423)
chr2 (320-352)||(2743457-2743489)
chr2 (320-352)||(2743523-2743555)
chr2 (320-352)||(11951283-11951315)
chr2 (320-352)||(31315204-31315236)
[»] chr1 (15 HSPs)
chr1 (295-352)||(15088584-15088641)
chr1 (295-352)||(22207981-22208038)
chr1 (295-352)||(22211192-22211249)
chr1 (311-352)||(22207778-22207819)
chr1 (295-352)||(51844365-51844422)
chr1 (310-350)||(14114754-14114794)
chr1 (310-346)||(14114823-14114859)
chr1 (320-352)||(22207709-22207741)
chr1 (320-352)||(22207845-22207877)
chr1 (320-352)||(22208048-22208080)
chr1 (320-352)||(22208115-22208147)
chr1 (310-349)||(14114894-14114933)
chr1 (311-352)||(22207914-22207955)
chr1 (295-352)||(51844298-51844355)
chr1 (295-352)||(51844432-51844489)
[»] chr5 (5 HSPs)
chr5 (310-352)||(41528656-41528698)
chr5 (295-352)||(41528458-41528514)
chr5 (295-352)||(41528524-41528580)
chr5 (295-352)||(41528590-41528646)
chr5 (320-352)||(37368926-37368958)
[»] scaffold0060 (2 HSPs)
scaffold0060 (311-352)||(39927-39968)
scaffold0060 (320-352)||(40003-40035)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 8578714 - 8578860
Alignment:
Q  76 ttagaggatccataaggaagtattatcttttagtttatgaatttatgcataagtgtcgtgtggactgtggagggttaactattcaagacttagtagaatc 175  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||               
T  8578714 ttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagtgtcgtgtgaactgtggagagttgactattcaagac----------- 8578802  T
Q  176 ttataagttttaaatcttgaat---gcagcattattgtttttgaagttaccacaactacaa 233  Q
       ||||||||| |||||||||   ||||||||||||||||| ||||||||||||||||||    
T  8578803 ---taagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaa 8578860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 45227277 - 45227332
Alignment:
Q  296 atagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatg 351  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  45227277 atagtaagaaatgtaaaaactctgtttgctacaacgaagagataatgtagcctatg 45227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5938795 - 5938738
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  5938795 catagtaacaaatgcgaaaactcagtttgctacaacgaagagataatgtagactatga 5938738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 19480035 - 19480092
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||    
T  19480035 catagtaacaaatgcaaaaactttgtttcctacaatgaagagataatgtagcctatga 19480092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 18111643 - 18111592
Alignment:
Q  301 aacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  18111643 aacaaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatga 18111592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5938862 - 5938805
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||| ||||||||||    
T  5938862 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatga 5938805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5938929 - 5938872
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||    
T  5938929 catagtaacaaatgtgaaaactccgtttgctacaacgaagagatgatgtagcctatga 5938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 18111582 - 18111525
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  |||||||||||||||||||||||||||||||||    
T  18111582 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 18111525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 19384340 - 19384283
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||| |||||||  |||||||| ||||||||||||||||||||||||    
T  19384340 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtagcctatga 19384283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 28034734 - 28034677
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||| | |||||| | |||||||||||||||| ||||||||||||||||    
T  28034734 catagtaacaaatccgaaaactttgtttgctacaacgaagaaataatgtagcctatga 28034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 28034785 - 28034744
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  28034785 aaaactctgtttgctacaacgaagagataatgtagcctatga 28034744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 19441125 - 19441070
Alignment:
Q  297 tagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||| |||||||  |||||||| ||||||||||||||||| ||||||    
T  19441125 tagtaacaaatgcgaaaactccgtttgctacgacgaagagataatgtagtctatga 19441070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 5835677 - 5835636
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  5835677 aaaactccgtttgctacaacgaagagataatgtagcctatga 5835636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5938996 - 5938939
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||| ||  |||||||||||||||||||||||||||||||||    
T  5938996 catagtaataaatgtgaaaattccgtttgctacaacgaagagataatgtagcctatga 5938939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 18111515 - 18111458
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||| |||||||||  ||||| |  |||||||||||||||||||||||||||||||||    
T  18111515 cataataacaaatgtgaaaaccccgtttgctacaacgaagagataatgtagcctatga 18111458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 19384278 - 19384221
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||| |||||||  |||||||| |||||||||||||||| |||||||    
T  19384278 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtaacctatga 19384221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 19441178 - 19441137
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  19441178 aaaactttgtttgctacaacgaagagataatgtagcctatga 19441137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 28034851 - 28034810
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  28034851 aaaactccgtttgctacaacgaagagataatgtagcctatga 28034810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 14521046 - 14521078
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  14521046 tttgctacaacgaagagataatgtagcctatga 14521078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 19384147 - 19384107
Alignment:
Q  312 aaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  19384147 aaactccatttgctacgacgaagagataatgtagcctatga 19384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 29897168 - 29897129
Alignment:
Q  313 aactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  29897168 aactctgtttgctacaacaaagagataatgtagcctatga 29897129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 8553561 - 8553460
Alignment:
Q  188 aatcttgaatgcagcattattgtttttgaagttaccacaactacaaaaactctgtgattgagcccatatcagccacattcaaggtgatactctgcagtat 287  Q
    |||||||||||  ||||||||| |||| |||||||||||||||||| |        |||||| |  ||||| |||||||  | |||||||||||||||||    
T  8553561 aatcttgaatgtggcattattggttttaaagttaccacaactacaaca-------cattgagtctgtatcaaccacatttgatgtgatactctgcagtat 8553469  T
Q  288 agtatcaca 296  Q
    |||||||||    
T  8553468 agtatcaca 8553460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 8584154 - 8584192
Alignment:
Q  258 agccacattcaaggtgatactctgcagtatagtatcaca 296  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  8584154 agccacattccatgtgatactctgcagtatagtatcaca 8584192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 5939047 - 5939006
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  5939047 aaaactccgtttgctacaacgaagagataatgtagtctatga 5939006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 8578423 - 8578456
Alignment:
Q  43 gttgaactcgctcatcttggtgaaggacatccat 76  Q
    |||||||||||||||||||| |||||||||||||    
T  8578423 gttgaactcgctcatcttggggaaggacatccat 8578456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 14521112 - 14521144
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||||||||||||||| |||||    
T  14521112 tttgctacaacgaagagataatgtagcgtatga 14521144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 19479993 - 19480025
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||| ||||||||||    
T  19479993 tttgctacaacgaagagataatatagcctatga 19480025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 29897106 - 29897074
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||| ||||||||||||||||    
T  29897106 tttgctacaacgaagaaataatgtagcctatga 29897074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 5249991 - 5250048
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5249991 catagtaacaaatgcgaaaactctatttgctacaacgaagagataatgtagcctatga 5250048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 28145287 - 28145227
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatgatgt 355  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  28145287 catagtaacgaatgcaaaatctccgtttgctacaacgaagagataatgtagcctatgatgt 28145227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 28145220 - 28145163
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||    
T  28145220 catagtaacaaatgcgaagactccgtttgctacaacgaagagataatgtagcctatga 28145163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 26620431 - 26620487
Alignment:
Q  296 atagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||    
T  26620431 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatga 26620487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 26726410 - 26726466
Alignment:
Q  296 atagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||    
T  26726410 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatga 26726466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 31113201 - 31113259
Alignment:
Q  295 catagtaacaaatgcaaaaac-tctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  31113201 catagtaacaaatgtgaaaacctctatttgctacaacgaagagataatgtagcttatga 31113259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 6406653 - 6406612
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  6406653 aaaactctgtttgctacaacgaagagataatgtagcctatga 6406612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 28145153 - 28145096
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||||  ||||||||||| |||||||||||||||||||||    
T  28145153 catagtaacaaatgtgaaaactccgtttgctacaacaaagagataatgtagcctatga 28145096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 31113150 - 31113191
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  31113150 aaaactctgtttgctacaacgaagagataatgtagcctatga 31113191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 34255591 - 34255631
Alignment:
Q  312 aaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  34255591 aaactctgtttgctacaacgaagagataatgtagcctatga 34255631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 5250075 - 5250117
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  5250075 aaaaactccatttgctacaacgaagaaataatgtagcctatga 5250117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 29934548 - 29934590
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  29934548 aaaatctccatttgctacaacgaagagataatgtagcctatga 29934590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 26620388 - 26620420
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  26620388 tttgctacaacgaagagataatgtagcctatga 26620420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 26726367 - 26726399
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  26726367 tttgctacaacgaagagataatgtagcctatga 26726399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 29934624 - 29934656
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  29934624 tttgctacaacgaagagataatgtagcctatga 29934656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 33296088 - 33296120
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  33296088 tttgctacaacgaagagataatgtagcctatga 33296120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 34255467 - 34255499
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  34255467 tttgctacaacgaagagataatgtagcctatga 34255499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 34255533 - 34255565
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  34255533 tttgctacaacgaagagataatgtagcctatga 34255565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 34255665 - 34255697
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  34255665 tttgctacaacgaagagataatgtagcctatga 34255697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 26620314 - 26620352
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcct 348  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  26620314 aaaaactccgtttgctacaacgaagagataatgtagcct 26620352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 26726227 - 26726265
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcct 348  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  26726227 aaaaactccgtttgctacaacgaagagataatgtagcct 26726265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 26726301 - 26726333
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||||||||||||||| |||||    
T  26726301 tttgctacaacgaagagataatgtagcttatga 26726333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 28145329 - 28145297
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||| ||||||    
T  28145329 tttgctacaacgaagagataatgtagtctatga 28145297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 90552 - 90495
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  90552 catagtaacaaatgcgaaaactttgtttgctacaacgaagagataatgtagcctatga 90495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 90662 - 90630
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||| ||||||||||||||||||    
T  90662 tttgctacaacgaatagataatgtagcctatga 90630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 3165849 - 3165906
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  3165849 catagtaacaagtgcaaaaactctgtttgctacaacgaagagataatgtagcttatga 3165906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 25336674 - 25336617
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  25336674 catagtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatga 25336617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 3165982 - 3166039
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||    
T  3165982 catagtaacaagtgcgaaaattccatttgctacaacgaagagataatgtagcctatga 3166039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 25336607 - 25336552
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctat 350  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||||||||||||    
T  25336607 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 25336552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 3165916 - 3165972
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||    
T  3165916 catagtaacaattgcaaaaactctgtttgctac-acgaagagataatgcagcctatga 3165972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5557959 - 5557903
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||| |||||||||||||||||||||||||||||||||    
T  5557959 catagtaacaaatgtgaaa-ctctgtttgctacaacgaagagataatgtagcctatga 5557903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 25336545 - 25336489
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||    
T  25336545 catagtaacaaatgcgaaacttc-atttgctacaacgaagagataatgtagcctatga 25336489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5557893 - 5557837
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  5557893 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 5557837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 20810385 - 20810442
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||  |||  ||| |||||||||||||||||||||||||||||||||    
T  20810385 catagtaacgaatgtgaaatatctgtttgctacaacgaagagataatgtagcctatga 20810442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 3165783 - 3165839
Alignment:
Q  296 atagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||| ||  |||||| | ||||||||||||||||||||||||||| |||||    
T  3165783 atagtaacaagtgtgaaaactttgtttgctacaacgaagagataatgtagcttatga 3165839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 5557803 - 5557771
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  5557803 tttgctacaacgaagagataatgtagcctatga 5557771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 20810343 - 20810375
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  20810343 tttgctacaacgaagagataatgtagcctatga 20810375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 5557737 - 5557707
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctat 350  Q
    |||||||||||||||||||||||||||||||    
T  5557737 tttgctacaacgaagagataatgtagcctat 5557707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 5558078 - 5558036
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||  |||||||||||||||||||||||||||| ||||    
T  5558078 aaaaactccgtttgctacaacgaagagataatgtagccgatga 5558036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Original strand, 3166075 - 3166104
Alignment:
Q  321 ttgctacaacgaagagataatgtagcctat 350  Q
    ||||||||||||||||||||||||||||||    
T  3166075 ttgctacaacgaagagataatgtagcctat 3166104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 21542079 - 21542112
Alignment:
Q  319 atttgctacaacgaagagataatgtagcctatga 352  Q
    |||| |||||||||||||||||||||||||||||    
T  21542079 attttctacaacgaagagataatgtagcctatga 21542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 25336725 - 25336684
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||| ||||||||||||||||||    
T  25336725 aaaactccgtttgctacaacgaaaagataatgtagcctatga 25336684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 26082081 - 26082049
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||||||||||||||    
T  26082081 tttgctacaacgaagtgataatgtagcctatga 26082049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 26082149 - 26082117
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||| ||||||||||||||||||||    
T  26082149 tttgctacaacggagagataatgtagcctatga 26082117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 31663564 - 31663618
Alignment:
Q  298 agtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  31663564 agtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatga 31663618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 5578236 - 5578293
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  5578236 catagtaacgaatgcgaaatctctgtttgctacaacgaagagataatgtagcctatga 5578293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 4852626 - 4852584
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4852626 aaaaactctgtttgctacaacgaagagataatgtagcctatga 4852584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 4852695 - 4852653
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4852695 aaaaactctgtttgctacaacgaagagataatgtagcctatga 4852653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 6735363 - 6735421
Alignment:
Q  295 catagtaacaaatgcaaaaa-ctctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||    
T  6735363 catagtaacaaatgtaaaaatctctgtttgctacaacgaagagataatgtagcttatga 6735421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 1506050 - 1505993
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||    
T  1506050 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 1505993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 13713230 - 13713189
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  13713230 aaaactctgtttgctacaacgaagagataatgtagcctatga 13713189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 31663427 - 31663484
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  |||||||||||||||||||||||||||||||||    
T  31663427 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 31663484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 5600039 - 5599995
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatgatg 354  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  5600039 aaaaactccgtttgctacaacgaagagataatgtagcctatgatg 5599995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 1506183 - 1506126
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||  |||||||  |||||||||||||||||||||| ||||||||||    
T  1506183 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatatagcctatga 1506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 5578441 - 5578486
Alignment:
Q  304 aaatgcaaaaactctatttgctacaacgaagagataatgtagccta 349  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||    
T  5578441 aaatgcgaaaactccgtttgctacaacgaagagataatgtagccta 5578486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 5599987 - 5599931
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  5599987 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 5599931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 13713163 - 13713122
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  13713163 aaaactccgtttgctacaacgaagagataatgtagcctatga 13713122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 13713363 - 13713322
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  13713363 aaaactccgtttgctacaacgaagagataatgtagcctatga 13713322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 14190557 - 14190501
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  14190557 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 14190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 31663308 - 31663349
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  31663308 aaaactccgtttgctacaacgaagagataatgtagcctatga 31663349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 31663376 - 31663417
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  31663376 aaaactccgtttgctacaacgaagagataatgtagcctatga 31663417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 1506092 - 1506060
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  1506092 tttgctacaacgaagagataatgtagcctatga 1506060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 1506225 - 1506193
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  1506225 tttgctacaacgaagagataatgtagcctatga 1506193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 5599831 - 5599799
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  5599831 tttgctacaacgaagagataatgtagcctatga 5599799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 5599897 - 5599865
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  5599897 tttgctacaacgaagagataatgtagcctatga 5599865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 5909108 - 5909076
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  5909108 tttgctacaacgaagagataatgtagcctatga 5909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 5909174 - 5909142
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  5909174 tttgctacaacgaagagataatgtagcctatga 5909142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 13702661 - 13702629
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  13702661 tttgctacaacgaagagataatgtagcctatga 13702629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 13713296 - 13713256
Alignment:
Q  312 aaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  13713296 aaactctgtttgctacgacgaagagataatgtagcctatga 13713256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 14190609 - 14190570
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagccta 349  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  14190609 aaaatctctgtttgctacaacgaagagataatgtagccta 14190570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 31663229 - 31663280
Alignment:
Q  301 aacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  31663229 aacaaatgcaaaaaatccgtttgctacaatgaatagataatgtagcctatga 31663280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 31663494 - 31663549
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctat 350  Q
    |||||||| |||||  |||||||  |||||||||| ||||||||||||||||||||    
T  31663494 catagtaaaaaatgtgaaaactccgtttgctacaatgaagagataatgtagcctat 31663549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 1506301 - 1506259
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||| | ||||| |||||||||||||||||||||||||||    
T  1506301 aaaaactatgtttgcaacaacgaagagataatgtagcctatga 1506259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 13713431 - 13713389
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||  ||||||||||||||||||||||||| |||||||    
T  13713431 aaaaactccgtttgctacaacgaagagataatgtatcctatga 13713389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 6735431 - 6735476
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataa 340  Q
    |||||||||||||||||||||  | ||| |||||||||||||||||    
T  6735431 catagtaacaaatgcaaaaacattgtttactacaacgaagagataa 6735476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 4852755 - 4852723
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| |||||||||||||||||||||||    
T  4852755 tttgctacaccgaagagataatgtagcctatga 4852723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 5578327 - 5578359
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||| ||||    
T  5578327 tttgctacaacgaagagataatgtagccaatga 5578359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 3701 - 3644
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||    
T  3701 catagtaacaaatgtgaaaactttgtttgctacaacgaagagataatgtagcctatga 3644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 3634 - 3577
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||||||  |||  ||||||||||||||||||||||||||||    
T  3634 catagtaacaaatgtgaaaactccgtttattacaacgaagagataatgtagcctatga 3577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 69747 - 69804
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||||    
T  69747 catagtaacaaatgacaaaaatctgtttgctacaacgaagagataatgtagcctatga 69804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 69814 - 69873
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatgatg 354  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||| ||||||||||||    
T  69814 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatgatg 69873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 69695 - 69737
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||    
T  69695 aaaaaatctgtttgctacaatgaagagataatgtagcctatga 69737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 3078555 - 3078612
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  3078555 catagtaacgaatgcaaaaactccgtttgctacaacgaatagataatgtagcctatga 3078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 3081403 - 3081347
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  3081403 catagtaacaaatgcaaaaactccgtttgctacaacgaa-agataatgtagcctatga 3081347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 15695427 - 15695484
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  15695427 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatga 15695484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 15702407 - 15702464
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  15702407 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatga 15702464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 21958537 - 21958594
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||    
T  21958537 catagtaacaaatgcgaaaactccgtttgctacaacgaagagataatatagcctatga 21958594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 3081182 - 3081140
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3081182 aaaaactctatttgctacaacgaagagataacgtagcctatga 3081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 4341353 - 4341296
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||    
T  4341353 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 4341296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 21958470 - 21958527
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| || | ||  |||||||||||||||||||||||||||||||||    
T  21958470 catagtaacaaatgcgaagattccgtttgctacaacgaagagataatgtagcctatga 21958527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 48478398 - 48478354
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatgatg 354  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  48478398 aaaaactccgtttgctacaacgaagagataatgtagcctatgatg 48478354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 3078650 - 3078692
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||||||||||| |||||||||||||||||||    
T  3078650 aaaaactctgtttgctacaacgatgagataatgtagcctatga 3078692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 42785902 - 42785944
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  42785902 aaaaactccgtttgctacaacgaagagataatgtagcctatga 42785944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 34456446 - 34456503
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  |||||||||||||||||||||||||| ||||||    
T  34456446 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagtctatga 34456503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 42785954 - 42786010
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  42785954 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 42786010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 48478346 - 48478290
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  48478346 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 48478290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 3078497 - 3078545
Alignment:
Q  304 aaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||| | |||| ||||||||||||||||||||| ||||||    
T  3078497 aaatgcaaaaactttgtttgttacaacgaagagataatgtagtctatga 3078545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 4341262 - 4341230
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  4341262 tttgctacaacgaagagataatgtagcctatga 4341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 4341461 - 4341429
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  4341461 tttgctacaacgaagagataatgtagcctatga 4341429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 34456338 - 34456370
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  34456338 tttgctacaacgaagagataatgtagcctatga 34456370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 34456404 - 34456436
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  34456404 tttgctacaacgaagagataatgtagcctatga 34456436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 48477994 - 48477962
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  48477994 tttgctacaacgaagagataatgtagcctatga 48477962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 48478060 - 48478028
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  48478060 tttgctacaacgaagagataatgtagcctatga 48478028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 48478126 - 48478094
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  48478126 tttgctacaacgaagagataatgtagcctatga 48478094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 48478256 - 48478224
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  48478256 tttgctacaacgaagagataatgtagcctatga 48478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 4341419 - 4341363
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||| ||| |||  ||||||||||||||||||||||||||| |||||    
T  4341419 catagtaacgaatgcgaaa-ctccgtttgctacaacgaagagataatgtagcttatga 4341363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 31346814 - 31346871
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||    
T  31346814 catagtaaaaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatga 31346871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 31346934 - 31346988
Alignment:
Q  296 atagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctat 350  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||||||||    
T  31346934 atagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 31346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 31315056 - 31314999
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  |||||||||||||||||||||||||||||||||    
T  31315056 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 31314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 31315107 - 31315066
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  31315107 aaaactctgtttgctacaacgaagagataatgtagcctatga 31315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 31315177 - 31315136
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  31315177 aaaactctgtttgctacaacgaagagataatgtagcctatga 31315136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 31347067 - 31347124
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  |||||||||||||||||||||||||||||||||    
T  31347067 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 31347124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 31347000 - 31347057
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||| |||||  |||||||  ||||||||||||||||||||||||||| |||||    
T  31347000 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcatatga 31347057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 2743325 - 2743357
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  2743325 tttgctacaacgaagagataatgtagcctatga 2743357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 2743391 - 2743423
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  2743391 tttgctacaacgaagagataatgtagcctatga 2743423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 2743457 - 2743489
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  2743457 tttgctacaacgaagagataatgtagcctatga 2743489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 2743523 - 2743555
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  2743523 tttgctacaacgaagagataatgtagcctatga 2743555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 11951283 - 11951315
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  11951283 tttgctacaacgaagagataatgtagcctatga 11951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 31315236 - 31315204
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  31315236 tttgctacaacgaagagataatgtagcctatga 31315204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 15088641 - 15088584
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||    
T  15088641 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtagcatatga 15088584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 22208038 - 22207981
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||    
T  22208038 catagtaacaaattcaaaaattctgtttgctacaaccaagagataatgtagcctatga 22207981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 22211249 - 22211192
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||    
T  22211249 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtagcatatga 22211192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 22207819 - 22207778
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  22207819 aaaactccgtttgctacaacgaagagataatgtagcctatga 22207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 51844422 - 51844365
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||| ||||| ||| |||  ||||||||| |||||||||||||||||||||||    
T  51844422 catagtaacgaatgcgaaatctccgtttgctacagcgaagagataatgtagcctatga 51844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 14114754 - 14114794
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctat 350  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  14114754 aaaaactccgtttgctacaacgaagagataatgtagcctat 14114794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 14114823 - 14114859
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagc 346  Q
    ||||||||| |||||||||||||||||||||||||||    
T  14114823 aaaaactctgtttgctacaacgaagagataatgtagc 14114859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 22207741 - 22207709
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  22207741 tttgctacaacgaagagataatgtagcctatga 22207709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 22207877 - 22207845
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  22207877 tttgctacaacgaagagataatgtagcctatga 22207845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 22208080 - 22208048
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  22208080 tttgctacaacgaagagataatgtagcctatga 22208048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 22208147 - 22208115
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  22208147 tttgctacaacgaagagataatgtagcctatga 22208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 14114894 - 14114933
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagccta 349  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  14114894 aaaaattctgtttgctacaacgaagagataatgtagccta 14114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 22207955 - 22207914
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||  ||||||||||||||||||||||||| |||||||    
T  22207955 aaaactccgtttgctacaacgaagagataatgtaacctatga 22207914  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 51844355 - 51844298
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||| ||||| ||||||||| |||| || |||||| | |||||||||    
T  51844355 catagtaacaaatgcgaaaacactatttgctgcaacaaaaagataacgcagcctatga 51844298  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 51844489 - 51844432
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||| |||| ||||| ||| |||  ||||||||||||||||||||||||||| |||||    
T  51844489 cataataacgaatgcgaaatctccgtttgctacaacgaagagataatgtagcttatga 51844432  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 41528698 - 41528656
Alignment:
Q  310 aaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  41528698 aaaaactccgtttgctacaacgaagagataatgtagcctatga 41528656  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 41528514 - 41528458
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  41528514 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 41528458  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 41528580 - 41528524
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  41528580 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 41528524  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 41528646 - 41528590
Alignment:
Q  295 catagtaacaaatgcaaaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    ||||||||||||||  ||| |||  |||||||||||||||||||||||||||||||||    
T  41528646 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatga 41528590  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 37368926 - 37368958
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  37368926 tttgctacaacgaagagataatgtagcctatga 37368958  T

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Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 39927 - 39968
Alignment:
Q  311 aaaactctatttgctacaacgaagagataatgtagcctatga 352  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  39927 aaaattctgtttgctacaacgaagagataatgtagcctatga 39968  T

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Target: scaffold0060; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 40003 - 40035
Alignment:
Q  320 tttgctacaacgaagagataatgtagcctatga 352  Q
    |||||||||||||||||||||||||||||||||    
T  40003 tttgctacaacgaagagataatgtagcctatga 40035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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