View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_35 (Length: 373)
Name: NF6860_low_35
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_35 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 25 - 373
Target Start/End: Original strand, 5950252 - 5950600
Alignment:
| Q |
25 |
caactgtcttgaataaccgtcttttgtttatctcttcaacaagtgatcggtgaagcaattggctcctcatatcaattagtgacttattcctcgttaatat |
124 |
Q |
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| T |
5950252 |
caactgtcttgaataaccgtcttttgtttacctcttcaacaagtgatcggtgaagtaattggctcctcatatcaattagtgacttattcctcgttaatat |
5950351 |
T |
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| Q |
125 |
acgattctctatcatcctctcacattcacttgtagaaggttcttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaa |
224 |
Q |
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| T |
5950352 |
acgattctctatcatcctctcacattcacttgtagaaggttcttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaa |
5950451 |
T |
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| Q |
225 |
aaccttgtacacttgtgactcatgatgggatgtttatcgtttcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcgaaat |
324 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5950452 |
aaccttgtacacttgtgactcatgatgggatgtttattgtttcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcggaat |
5950551 |
T |
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| Q |
325 |
atgtatatgaagagcataacgagctgtcatcatcgaacgtatcatctac |
373 |
Q |
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| T |
5950552 |
atgtatatgaagagcataacgagctgtcataatcaaacgtatcatctac |
5950600 |
T |
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