View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_36 (Length: 372)
Name: NF6860_low_36
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 36607528 - 36607887
Alignment:
| Q |
4 |
aggctgcaaataagggtgctttaagatatcggatgcctgcgtaatacataaatgaaagttttcaggatatgtaccgatgggaaacttgtttcacaatgaa |
103 |
Q |
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| T |
36607528 |
aggctgcaaataagggtgctttaagatatcggatgcctgtgtaatacataaatgaaagttttcaggatatgtaccgatgggaaacttgtttcacaatgaa |
36607627 |
T |
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| Q |
104 |
aataatgttggtctttaagagagacttactgttggacgatgctcggggtttttccttaacatgccttttatcagtgtcttcctgtgtgtatggatttaaa |
203 |
Q |
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| T |
36607628 |
aataatgttggtctttaagagagacttactgttggacgatgctcggggtttttccttaacatgccttttatcagtgttttcctgtgtgtatggatgtaaa |
36607727 |
T |
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| Q |
204 |
gtttaagattacatacatgcacagagaggaaagtaaaaagannnnnnnnnnnnnatgtggctctgatagttatcattatcaacttcatgttcattgatga |
303 |
Q |
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| T |
36607728 |
gtttaagattacatacatgcacagagaggaaagtaaaaaga---ttttttttttatgtggctctgatag------ttatcaacttcatgttcattgatga |
36607818 |
T |
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| Q |
304 |
tgcttaccagacaccaatgacatttcttacagtaaacaaaatttgaagtggtgcaataaatgcagtgtc |
372 |
Q |
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| T |
36607819 |
tgcttaccggacaccaatgacatttcttacagtaaacaaaatttgaagtggtgcaacaaatgcagtgtc |
36607887 |
T |
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