View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_38 (Length: 362)
Name: NF6860_low_38
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 9462556 - 9462316
Alignment:
| Q |
25 |
agacgaacacatgatagatagttgatgttaatttacattctgcttttgattaagaaacatgtcgattacttgagatgaaaacaaaagccttttctaggtt |
124 |
Q |
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| T |
9462556 |
agacgaacacatgatagatagttgatgttaatttacattctgcttttgattaagaaacatgtctattacttgagatgaaaacaaaagccttttctaggtt |
9462457 |
T |
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| Q |
125 |
aaatatttagtcattaattattttggtaattacatcatatttggtttgatatgatcaatgtattgattttctttgtagttacagaagaaataaaaaacag |
224 |
Q |
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| T |
9462456 |
aaatatttagtcattaattattttggtaattacatcatatttggtttgatatgatcaatgtattgattttctttgtaattacagaagaaataaaaaacag |
9462357 |
T |
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| Q |
225 |
gtatttgatagttggtgattcttgtatttcagaagaaatgt |
265 |
Q |
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| T |
9462356 |
gtatttgatagttggtgattcttgtatttcagaagaaatgt |
9462316 |
T |
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