View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_4 (Length: 697)
Name: NF6860_low_4
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 9e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 29524807 - 29524586
Alignment:
| Q |
5 |
aagctcgtgtagatttttatatgaccatatcgtgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaataca |
104 |
Q |
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| T |
29524807 |
aagcccgtgtagggttttatatgaccatatcgtgtggatgttgagaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccataca |
29524708 |
T |
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| Q |
105 |
aaaagaactttagaatgttccattttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactag |
204 |
Q |
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| T |
29524707 |
gaaagaacttgagagtgttccattttccaatgaaacgattgaaagaatggctctgagcattacataataggcctactacacttgacacaattccaactat |
29524608 |
T |
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| Q |
205 |
tcttcacaatgcgttggcatta |
226 |
Q |
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| T |
29524607 |
tctccacattacgttggtatta |
29524586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 29612564 - 29612371
Alignment:
| Q |
37 |
tgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaatacaaaaagaactttagaatgttccattttccaatt |
136 |
Q |
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| T |
29612564 |
tgtggatggtgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaatt |
29612465 |
T |
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| Q |
137 |
aaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactagtcttcacaatgcgttggcattagaaa |
230 |
Q |
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| T |
29612464 |
aaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttgccactagaaa |
29612371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 452 - 658
Target Start/End: Complemental strand, 29489009 - 29488803
Alignment:
| Q |
452 |
gagcaagcgattttttattagcatccaagatccttagctagtcttgatataaaactttcaatggaatgatttcaagaaagatcatgtatctgtgtaattc |
551 |
Q |
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| T |
29489009 |
gagcaagtgattttttatatgcatccaagatccttagctagtcttgatatcaaactttcaatgaattaatctttagaaagatcatgtatcattgtaattc |
29488910 |
T |
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| Q |
552 |
attgactgttagtatattaagtgtgatttagaaatcccacattagac-ggaaaaatggatattgagcaatatataagcgagaggattcatatactttaat |
650 |
Q |
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| T |
29488909 |
attgattattagtattttacatgcgagttagaagt-ccacattaaacaggaaaaatggatgttgagcaatttataaattagaggactcatatactttaat |
29488811 |
T |
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| Q |
651 |
gttttaag |
658 |
Q |
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| T |
29488810 |
gttttaag |
29488803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 29528996 - 29529070
Alignment:
| Q |
129 |
ttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
203 |
Q |
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| T |
29528996 |
ttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaacta |
29529070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 29475317 - 29475394
Alignment:
| Q |
126 |
attttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
203 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||| | || || |||| |||||||| ||||||||||| |
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| T |
29475317 |
attttccaattaatcgattgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaacta |
29475394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 642
Target Start/End: Complemental strand, 40260871 - 40260799
Alignment:
| Q |
570 |
aagtgtgatttagaaatcccacattagacggaaaaatggatattgagcaatatataagcgagaggattcatat |
642 |
Q |
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| T |
40260871 |
aagtgtgagtttgaagtcccacattagatggaaaagtgaatgttgagcaacatataagtgagaagactcatat |
40260799 |
T |
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