View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_low_42 (Length: 343)
Name: NF6860_low_42
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 41697515 - 41697188
Alignment:
| Q |
1 |
ggcattgacgatgctataaatgtttgattttagagcctttgcatttttt-aaattttaatgaactcttatgaatttaatgtttataatatgttatgctct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41697515 |
ggcattgacgatgctataaatgtttgattttagagcctttgcatttttttaaattttaatgaactcttatgaatttaatgtttataatatgttatgctct |
41697416 |
T |
|
| Q |
100 |
tgttttgacagaggatccgttcatcagaaatttcagtggggcattcttataacctaattgaaataagtactcgtaggattgttaatgttgaaactgcatc |
199 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41697415 |
tgttttaacagaggattcgttcatcagaaatttcagtggggcattcttataacctaattgaaataagtactcgtaggattgttaatgttgaaactgcatc |
41697316 |
T |
|
| Q |
200 |
caaaaagcgaatttcaattcacgaggttggagaaacacctttcttccatgcaaacatgtatcgtcacctacatattaatcaggtaagtttttcagaaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41697315 |
caaaaagcgaatttcaattcacgaggttggagaaacgcctttcttccatgcaaacatgtaccgtcacctacatattaatcaggtaagtttttcagaaaat |
41697216 |
T |
|
| Q |
300 |
acaagtcttgttttatcccacacacaca |
327 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
41697215 |
acaagtcttgttttatcccccacacaca |
41697188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University