View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_47 (Length: 300)
Name: NF6860_low_47
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_47 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 19292590 - 19292302
Alignment:
| Q |
6 |
aaattgatgcatatttcaagaacattttagagaaatttagaatatatagcctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattag |
105 |
Q |
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| T |
19292590 |
aaattgatgcatatttcaagaacattttagagaaatttagaata----gcctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattag |
19292497 |
T |
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| Q |
106 |
cttataggctaaaaacatccatcataatttaaacttgaaaagccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatag |
205 |
Q |
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| T |
19292496 |
cttatagcctaaaaacatccatcacaatttaaacttgaaaagccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatag |
19292397 |
T |
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| Q |
206 |
acaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaa |
300 |
Q |
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| T |
19292396 |
acaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaa |
19292302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
196 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
246 |
Q |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
194 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
271 |
Q |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
194 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
271 |
Q |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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