View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_51 (Length: 289)

Name: NF6860_low_51
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_51
NF6860_low_51
[»] chr7 (6 HSPs)
chr7 (1-270)||(2333806-2334075)
chr7 (181-267)||(41482419-41482506)
chr7 (168-266)||(24429720-24429821)
chr7 (193-267)||(39644933-39645007)
chr7 (23-90)||(29200485-29200552)
chr7 (193-267)||(23318950-23319024)
[»] chr6 (3 HSPs)
chr6 (189-267)||(8547443-8547521)
chr6 (189-266)||(8573796-8573873)
chr6 (189-265)||(129107-129183)
[»] chr1 (6 HSPs)
chr1 (178-267)||(26793786-26793876)
chr1 (193-267)||(50004908-50004982)
chr1 (189-267)||(19806764-19806842)
chr1 (178-267)||(9383223-9383313)
chr1 (200-267)||(4076365-4076432)
chr1 (177-266)||(6768292-6768382)
[»] chr4 (7 HSPs)
chr4 (177-267)||(45413765-45413856)
chr4 (179-266)||(36625533-36625621)
chr4 (181-267)||(2183324-2183411)
chr4 (188-266)||(44126034-44126112)
chr4 (189-266)||(19181421-19181498)
chr4 (178-266)||(34666439-34666528)
chr4 (200-266)||(24155198-24155264)
[»] chr8 (4 HSPs)
chr8 (193-267)||(11066512-11066586)
chr8 (189-267)||(9028642-9028720)
chr8 (200-266)||(31734346-31734412)
chr8 (189-266)||(556809-556888)
[»] chr3 (2 HSPs)
chr3 (189-267)||(38457766-38457844)
chr3 (179-266)||(7038634-7038722)
[»] chr5 (1 HSPs)
chr5 (193-266)||(13109739-13109812)
[»] chr2 (2 HSPs)
chr2 (193-267)||(18665189-18665263)
chr2 (178-267)||(40626498-40626588)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 2333806 - 2334075
Alignment:
Q  1 caacggatcgaaaaactggaagtggaatttaattgaagaaacaagaagtagtggaattggaatataatccatattgattgggaaaataatcgnnnnnnnn 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||            
T  2333806 caacggatcgaaaaactggaattggaatttaattgaagaaacaagaagtagtggaattggaatataatcgatattgattgggaaaataatcgaaaaaaaa 2333905  T
Q  101 nnnnnnnnnnnnnnnnnctagaagcaataggagtcgaaggaggtttttgaggaatatagaatacgcttgtttgatagttatgctatcagttgctaaccaa 200  Q
                     |||||||||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  2333906 tgaaaaaagaaaaaaaactagaagcaatgagagtcgaaggaagtttttgaggaatatagaatacgcgtgtttgatagttatgctatcggttgctaaccaa 2334005  T
Q  201 ccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaat 270  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  2334006 ccaaaaaccagagataaaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaat 2334075  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 41482419 - 41482506
Alignment:
Q  181 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcc 41482506  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 24429821 - 24429720
Alignment:
Q  168 tgtttgatag--ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagtta 264  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| || |||||||||  |||||| ||||| |||    
T  24429821 tgtttgatagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaatta 24429722  T
Q  265 tc 266  Q
    ||    
T  24429721 tc 24429720  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 39645007 - 39644933
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||| ||||||||| ||||||||||||||||||   ||| ||||||||||||  |||| ||||||||||||||    
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatcc 39644933  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 29200485 - 29200552
Alignment:
Q  23 tggaatttaattgaagaaacaagaagtagtggaattggaatataatccatattgattgggaaaataat 90  Q
    |||||| |||||||| |||||||||| ||  |||||||||||||||  ||||| ||||||||||||||    
T  29200485 tggaatataattgaaaaaacaagaagcagatgaattggaatataattgatatttattgggaaaataat 29200552  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 23318950 - 23319024
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||| | |||||||||||||||||||| |||||   | ||||||||||||||  |||||||||||| ||||||    
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcc 23319024  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 8547443 - 8547521
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| ||||||||||||||||||||    
T  8547443 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcc 8547521  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 8573796 - 8573873
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| |||||||||||||||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatc 8573873  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 129107 - 129183
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttat 265  Q
    ||||||| || | ||||||| || |||||||||||||||  ||||||| |||||||||  ||||  |||||||||||    
T  129107 gttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 26793876 - 26793786
Alignment:
Q  178 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||   ||| |||||||||||| |||||| |||||||||||||    
T  26793876 ttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatcc 26793786  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 50004908 - 50004982
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||| ||||||||||||| ||||||    
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatcc 50004982  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 19806764 - 19806842
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||| ||||| ||||||||| |||||| | || ||||||  ||||||||||||||||| ||||||||||||| ||||||    
T  19806764 gttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcc 19806842  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 9383223 - 9383313
Alignment:
Q  178 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||||| ||||||||| | ||||||  |||||| |||||||||||  |||| ||||||| |||| ||||| ||||||| ||||||    
T  9383223 ttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatcc 9383313  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 4076365 - 4076432
Alignment:
Q  200 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    ||||||||| |||||| | || ||||||  ||||||||||||||||| | ||||||||||| ||||||    
T  4076365 accaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcc 4076432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 6768382 - 6768292
Alignment:
Q  177 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    ||||||||||||| || |||||| ||||||||  ||||||||||||||||||   || |||| |||||||  |||||| |||||| |||||    
T  6768382 gttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatc 6768292  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 45413765 - 45413856
Alignment:
Q  177 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||   |  ||||||||||||  ||||||||||||| ||||||    
T  45413765 gttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcc 45413856  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 36625533 - 36625621
Alignment:
Q  179 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| |||||  ||||||||||||||||||| ||||||||||| |||||    
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatc 36625621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 2183411 - 2183324
Alignment:
Q  181 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||   || ||||||||||||| |||||  |||||| ||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatcc 2183324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 44126112 - 44126034
Alignment:
Q  188 agttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    ||||||||||| | ||||||| ||| || | || ||||||| ||||||||||||||||| |||||| |||||| |||||    
T  44126112 agttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatc 44126034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 19181421 - 19181498
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||| | ||||||||| ||||| |||||||| |||   ||| |||||||||||| ||||||||||||| |||||    
T  19181421 gttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatc 19181498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 34666528 - 34666439
Alignment:
Q  178 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||||||| ||||||||| || ||||   | |||||||||||| |||  | |||||||||| |||| |||||||||||||||||||    
T  34666528 ttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggatatgattagaaataggtttaagttatc 34666439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 24155264 - 24155198
Alignment:
Q  200 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    ||||||||| |||||| |||||| ||||   ||| |||||||||||| ||||||| |||||||||||    
T  24155264 accaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatc 24155198  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 11066586 - 11066512
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||| ||||||||  ||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||    
T  11066586 ctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcc 11066512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 9028642 - 9028720
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||| | |||||||||||||||| ||| |||||   | ||||||||||||||  |||||||||||| ||||||    
T  9028642 gttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatcc 9028720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 31734412 - 31734346
Alignment:
Q  200 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    ||||||||| ||||||||||||||||||  ||| || ||||| |||| ||||||||||||| |||||    
T  31734412 accaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatc 31734346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 556888 - 556809
Alignment:
Q  189 gttgctaaccaaccaaaaa--ccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||||| ||||||||  | |||||| | || ||||||  |||||||||||| |||| ||||||||||||| |||||    
T  556888 gttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatc 556809  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 38457844 - 38457766
Alignment:
Q  189 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||| |||||  |||||| ||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggattagaaatgagtttaaattatcc 38457766  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 7038722 - 7038634
Alignment:
Q  179 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| ||||||  |||||| ||||||||| | ||||||||||| |||||    
T  7038722 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatc 7038634  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 13109812 - 13109739
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 266  Q
    |||||| ||||||||| ||||||||||||||||||  ||| |||||||| |||| |||||| ||| || |||||    
T  13109812 ctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatc 13109739  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 18665263 - 18665189
Alignment:
Q  193 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||| ||||||||  |||||||||| |||||||  |||| || ||||  ||| ||||||||||||||||||||    
T  18665263 ctaacccaccaaaaattaaggataaaattaacaaagggtgagtaagatattattagaaataggtttaagttatcc 18665189  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 40626588 - 40626498
Alignment:
Q  178 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 267  Q
    |||||||||||| ||| ||||| |||||||   |||||||||||||| |||  |||| |||||||||||| ||||||  ||||| ||||||    
T  40626588 ttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcc 40626498  T

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