View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_low_52 (Length: 288)
Name: NF6860_low_52
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 38143089 - 38143257
Alignment:
| Q |
18 |
aaataatttggcggatactttaatattagaattagaatcacataa---------gattaaactcaaataaattttaagaattaacaatttggaatttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38143089 |
aaataatttggcggatactttaatattagaattagaatcacataagaatgataagattaaactcaaataaattttaagaattaacaatttgaaatttaca |
38143188 |
T |
|
| Q |
109 |
cttcaataaagtagcaaatatgattttacatagaattaaatgcattttcagttttcatattcatgagta |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38143189 |
cttcaataaagtagcaaatatgattttacatagaattaaatgcattttcagttttcatattcatgagta |
38143257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 38143254 - 38143292
Alignment:
| Q |
193 |
agtaattatctcacgattacatagcgaaactagtttagc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38143254 |
agtaattatctcacgattacatagcgaaactagtttagc |
38143292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 38143352 - 38143394
Alignment:
| Q |
243 |
aaacacttgaaagtcgaaacactcgggatgatttcgtgtgaat |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38143352 |
aaacacttgaaagtcgaaatactcgggatgatttcgtgtgaat |
38143394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University