View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_53 (Length: 287)
Name: NF6860_low_53
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 24906496 - 24906234
Alignment:
| Q |
5 |
tttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
104 |
Q |
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| T |
24906496 |
tttggtgttggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
24906397 |
T |
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| Q |
105 |
gatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcc |
204 |
Q |
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| T |
24906396 |
gatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcc |
24906297 |
T |
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| Q |
205 |
tgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
267 |
Q |
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| T |
24906296 |
tgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
24906234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 24890930 - 24891192
Alignment:
| Q |
5 |
tttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
104 |
Q |
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| T |
24890930 |
tttggtgttggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
24891029 |
T |
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| Q |
105 |
gatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcc |
204 |
Q |
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| T |
24891030 |
gatttgcatcatgtgtgagttgttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcc |
24891129 |
T |
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| Q |
205 |
tgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
267 |
Q |
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| T |
24891130 |
tgttgagacagtaactggatctttcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
24891192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 24899037 - 24898775
Alignment:
| Q |
5 |
tttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
104 |
Q |
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| T |
24899037 |
tttggagttggaatcctttcaattccaaaagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagat |
24898938 |
T |
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| Q |
105 |
gatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcc |
204 |
Q |
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| T |
24898937 |
gatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcc |
24898838 |
T |
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| Q |
205 |
tgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
267 |
Q |
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| T |
24898837 |
tgttgagacagtaactggatcattcatgagttgtagtgaaatagggcatagaaaaaatggtgt |
24898775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 43262623 - 43262515
Alignment:
| Q |
125 |
agttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggat |
224 |
Q |
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||||||||||| ||||||||||| |||||| | ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || || |||| |
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| T |
43262623 |
agttgttttgtaacaggacatgtcatgtttttcttcgaaaatagccatttttcaatactttctctatcgtaggttatacctgttgagactgttaccggat |
43262524 |
T |
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| Q |
225 |
ccttcatga |
233 |
Q |
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| T |
43262523 |
ccttcatga |
43262515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 36744552 - 36744684
Alignment:
| Q |
127 |
ttgttttgtgacaggacatgttttgttttccgatgaaaatagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggatcc |
226 |
Q |
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| T |
36744552 |
ttgttttgtaacaggacaagtattgttttggaatgaaaataaccatttttctatgttttctctgtcgtacgtaattcctgtggaaagtgtgacaggatct |
36744651 |
T |
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| Q |
227 |
ttcatgagttgtagtgaaatagggcatagaaaa |
259 |
Q |
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||||| |||||||| ||||| ||||| |||||| |
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| T |
36744652 |
ttcataagttgtagggaaattgggcaaagaaaa |
36744684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 33089116 - 33089075
Alignment:
| Q |
169 |
ccatttttcgatgctttctctgtcgtaggttatgcctgttga |
210 |
Q |
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| T |
33089116 |
ccatttttcgatgctgtctctgtcgtaggttatgccggttga |
33089075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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