View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_56 (Length: 270)

Name: NF6860_low_56
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_56
NF6860_low_56
[»] chr2 (6 HSPs)
chr2 (1-257)||(40172426-40172686)
chr2 (195-246)||(29896132-29896183)
chr2 (192-246)||(32944135-32944189)
chr2 (195-246)||(5029071-5029122)
chr2 (195-245)||(25463237-25463287)
chr2 (209-246)||(2394958-2394995)
[»] chr7 (3 HSPs)
chr7 (195-246)||(44409273-44409324)
chr7 (195-246)||(3246460-3246511)
chr7 (214-246)||(30431927-30431959)
[»] chr8 (6 HSPs)
chr8 (205-246)||(4604334-4604375)
chr8 (203-246)||(220341-220384)
chr8 (203-246)||(689496-689539)
chr8 (203-246)||(733964-734007)
chr8 (203-246)||(857860-857903)
chr8 (200-246)||(22438560-22438606)
[»] chr5 (3 HSPs)
chr5 (203-246)||(39684311-39684354)
chr5 (209-246)||(22687866-22687903)
chr5 (214-246)||(38129003-38129035)
[»] chr3 (2 HSPs)
chr3 (195-246)||(6054196-6054247)
chr3 (195-246)||(17262292-17262343)
[»] chr1 (5 HSPs)
chr1 (203-245)||(35424214-35424256)
chr1 (195-245)||(51917480-51917530)
chr1 (214-246)||(195117-195149)
chr1 (214-246)||(9769570-9769602)
chr1 (209-245)||(32609237-32609273)
[»] chr4 (4 HSPs)
chr4 (195-256)||(54854150-54854211)
chr4 (189-245)||(9302623-9302679)
chr4 (214-246)||(21023342-21023374)
chr4 (218-246)||(54265001-54265029)
[»] chr6 (2 HSPs)
chr6 (198-246)||(4844216-4844264)
chr6 (218-246)||(6455526-6455554)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 40172686 - 40172426
Alignment:
Q  1 gcacttacttgagctagactacttaaatcttcctcaattttggctctttcccctttgattaaaaaacgtgtaccaactttaacaacctaatattttcata 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40172686 gcacttacatgagctagactacttaaatcttcctcaattttggctctttcccctttgattaaaaaacgtgtaccaactttaacaacctaatattttcata 40172587  T
Q  101 tgtaatacttataattttgtctccgattatac--gaagttaaaatttatgcattttgattatatt---tttacatttaaacataaatcactttaacttct 195  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||   |  |  ||||||||||||||||||||| || |    
T  40172586 tgtaatacttataattttgtctccgattatacttgaagttaaaatttatgcattttgattatattacataaatgtttaaacataaatcactttaa-tttt 40172488  T
Q  196 ttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataagcatgatgtcca 257  Q
    |||||| |||||||||| ||| || |||||| |||||||||| |||||| ||||| ||||||    
T  40172487 ttttgtcaagtaatctagtggctaaaattcacctttttcaagatgaatatgcatggtgtcca 40172426  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 29896132 - 29896183
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| ||||| |  |||||||||||||||||||||||||||||||||||    
T  29896132 tttttgtcaagtagttcaatggttagaattcatctttttcaaggtgaataag 29896183  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 32944189 - 32944135
Alignment:
Q  192 ttctttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||||||||| ||||||| ||||| ||||||||||  ||||||||||||||||||    
T  32944189 ttctttttgtcaagtaatttaatgattagaattcacttttttcaaggtgaataag 32944135  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 5029071 - 5029122
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| | ||| |||| ||| |||||||||||||||||||||||||||||    
T  5029071 tttttgtcaggtagtctagtgggtagaattcatctttttcaaggtgaataag 5029122  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 25463237 - 25463287
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataa 245  Q
    ||||||| |||||  ||| |||||||||||||| |||||||||||||||||    
T  25463237 tttttgtcaagtagcctagtggttagaattcatttttttcaaggtgaataa 25463287  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 2394958 - 2394995
Alignment:
Q  209 tctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  2394958 tctattggttagaattcacctttttcaaggtgaataag 2394995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 44409324 - 44409273
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| |||||| ||| ||||||||||||| |||||||||||||||||||    
T  44409324 tttttgtcaagtaacctagtggttagaattcacctttttcaaggtgaataag 44409273  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 3246460 - 3246511
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| || ||||||    
T  3246460 tttttgtcaagtaatctagtggttagaattcacctttttcaaagtaaataag 3246511  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 30431927 - 30431959
Alignment:
Q  214 tggttagaattcatctttttcaaggtgaataag 246  Q
    |||||||||||||| ||||||||||||||||||    
T  30431927 tggttagaattcatatttttcaaggtgaataag 30431959  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 4604334 - 4604375
Alignment:
Q  205 gtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  4604334 gtaatctagtggttagaattcatcttttttaaggtgaataag 4604375  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 220341 - 220384
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||    
T  220341 aagtagtctagtggttagaattcacctttttcaaggtgaataag 220384  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 689496 - 689539
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||    
T  689496 aagtagtctagtggttagaattcacctttttcaaggtgaataag 689539  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 733964 - 734007
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||    
T  733964 aagtagtctagtggttagaattcacctttttcaaggtgaataag 734007  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 857860 - 857903
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||    
T  857860 aagtagtctagtggttagaattcacctttttcaaggtgaataag 857903  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 22438560 - 22438606
Alignment:
Q  200 gtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||||||||| || |||||||||| |||||| ||||||||||||    
T  22438560 gtaaagtaatctagtgattagaattcaccttttttaaggtgaataag 22438606  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 39684354 - 39684311
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  39684354 aagtaatctagtggttagaattcaccttttttaaggtgaataag 39684311  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 22687866 - 22687903
Alignment:
Q  209 tctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  22687866 tctagtggttagaattcacctttttcaaggtgaataag 22687903  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 38129003 - 38129035
Alignment:
Q  214 tggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||||||||||| |||||||||||||||||    
T  38129003 tggttagaattcatcattttcaaggtgaataag 38129035  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 6054196 - 6054247
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| || || |||| ||||||||||||| |||||||||||||||||||    
T  6054196 tttttgtcaaatagtctagtggttagaattcacctttttcaaggtgaataag 6054247  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 17262343 - 17262292
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||| ||||| | ||||| |||||||||| |||||||||||||||||||    
T  17262343 tttttgtcaagtagtttaatgattagaattcacctttttcaaggtgaataag 17262292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 35424256 - 35424214
Alignment:
Q  203 aagtaatctaatggttagaattcatctttttcaaggtgaataa 245  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||    
T  35424256 aagtagtctagtggctagaattcatctttttcaaggtgaataa 35424214  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 51917480 - 51917530
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataa 245  Q
    ||||||| ||||| |||||||| ||||||||||||||||||| || |||||    
T  51917480 tttttgtcaagtagtctaatggctagaattcatctttttcaaagtaaataa 51917530  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 195149 - 195117
Alignment:
Q  214 tggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||||||||| |||||||||||||||||||    
T  195149 tggttagaattcacctttttcaaggtgaataag 195117  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 9769570 - 9769602
Alignment:
Q  214 tggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||||||||| |||||||||||||||||||    
T  9769570 tggttagaattcacctttttcaaggtgaataag 9769602  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 32609237 - 32609273
Alignment:
Q  209 tctaatggttagaattcatctttttcaaggtgaataa 245  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  32609237 tctagtggttagaattcatctttttcaaggcgaataa 32609273  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 54854150 - 54854211
Alignment:
Q  195 tttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataagcatgatgtcc 256  Q
    ||||||| ||||| |||| ||| |||||||||  ||||||||||||||||||  ||||||||    
T  54854150 tttttgtcaagtagtctagtggctagaattcacttttttcaaggtgaataagtgtgatgtcc 54854211  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 9302623 - 9302679
Alignment:
Q  189 aacttctttttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataa 245  Q
    ||||| ||||||| ||||| |||| || ||| |||||| ||||||||||||||||||    
T  9302623 aacttttttttgtcaagtagtctagtgattaaaattcacctttttcaaggtgaataa 9302679  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 21023342 - 21023374
Alignment:
Q  214 tggttagaattcatctttttcaaggtgaataag 246  Q
    ||||||||||||| |||||||||||||||||||    
T  21023342 tggttagaattcacctttttcaaggtgaataag 21023374  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 54265029 - 54265001
Alignment:
Q  218 tagaattcatctttttcaaggtgaataag 246  Q
    |||||||||||||||||||||||||||||    
T  54265029 tagaattcatctttttcaaggtgaataag 54265001  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 4844264 - 4844216
Alignment:
Q  198 ttgtaaagtaatctaatggttagaattcatctttttcaaggtgaataag 246  Q
    |||| ||||| |||| |||||||||||||  ||||||||||||||||||    
T  4844264 ttgtcaagtagtctagtggttagaattcacttttttcaaggtgaataag 4844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 6455554 - 6455526
Alignment:
Q  218 tagaattcatctttttcaaggtgaataag 246  Q
    |||||||||||||||||||||||||||||    
T  6455554 tagaattcatctttttcaaggtgaataag 6455526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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