View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_58 (Length: 262)
Name: NF6860_low_58
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33237053 - 33237299
Alignment:
| Q |
1 |
attcatgggatgcaaaagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaact |
100 |
Q |
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| T |
33237053 |
attcatgggatgcaaaagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaact |
33237152 |
T |
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| Q |
101 |
tgttaactctctgaaaatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237153 |
tgttaactctctgaaaatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatatt |
33237252 |
T |
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| Q |
201 |
cttgagtgggccactcggtctggtgttggttataacactcttgatgt |
247 |
Q |
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| T |
33237253 |
catgagtgggccactcggtctggtgttggttataacactcttgatgt |
33237299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33221218 - 33221273
Alignment:
| Q |
3 |
tcatgggatgcaaaagcacttatagctctagctgctttcactttggaatatggaaa |
58 |
Q |
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| T |
33221218 |
tcatgggatgcaaaagcacttataactctagctgctttcactttggaatatggaaa |
33221273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 26376344 - 26376580
Alignment:
| Q |
7 |
gggatgcaaaagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaa |
106 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
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| T |
26376344 |
gggatgcaaaagcacttgtagctctagctgctttcactttgaaatatggaaatcttttgcacctcattgagacttcaacctcatcagatcaacttgttaa |
26376443 |
T |
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| Q |
107 |
ctctctgaaaatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattcttgag |
206 |
Q |
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|||| ||||| ||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26376444 |
ctctttgaaacaacttaatcaaattcaaaatagaaaggtcattgttcctgtcacagatttggtggagttgataatggaagtgcttctgcatatt-acgag |
26376542 |
T |
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| Q |
207 |
tgggccactcggtctggtgttggttataacactcttga |
244 |
Q |
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| T |
26376543 |
agggccactcagtctggtgttggttatattactcttga |
26376580 |
T |
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