View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_60 (Length: 259)
Name: NF6860_low_60
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 7961647 - 7961438
Alignment:
| Q |
1 |
gttgaatataataactatgaggaaaaaatcatattaatattattagttattatttaagatttatgccattactactatgaagtatgaaagtttattataa |
100 |
Q |
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| T |
7961647 |
gttgaatataataactacgagggaaaaatcatattaatattattagttattatttaagatttattccattactactatgatgtatgaaagtttattataa |
7961548 |
T |
|
| Q |
101 |
ccaattccttagtttttatcttgcactattcattgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttataaacagttta |
200 |
Q |
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| T |
7961547 |
ccaattccttagtttttatcttgcactattcatcgtcttaagcacaggttaatactattgcatttggtttctcccttctctgcattttataaacaggtta |
7961448 |
T |
|
| Q |
201 |
ttaatactct |
210 |
Q |
| |
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||||| |||| |
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| T |
7961447 |
ttaattctct |
7961438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 7971603 - 7971445
Alignment:
| Q |
92 |
ttattataaccaattccttagtttttatc-ttgcactattcattgtcttaagcacagtttattactattgcatttggtttctcccttctctgcatcttat |
190 |
Q |
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||||||| |||||| ||||||||||| || ||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
7971603 |
ttattatgaccaat-ccttagtttttttccttgcactattcatcatcttaagcacaggttattacttttgcatttgttttctcccttctctgcattttat |
7971505 |
T |
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| Q |
191 |
aaacagtttattaatactctcaacgctacagaaggaagatagggtaaaaatctctttctg |
250 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||| |
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| T |
7971504 |
aaacaggttattaatactttcaaagctacagaaggaagatatggcaaaaatctctttctg |
7971445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7972012 - 7971969
Alignment:
| Q |
1 |
gttgaatataataactatgaggaaaaaatcatattaatattatta |
45 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
7972012 |
gttgaatataataacta-gaggaaaaaatcataataatattatta |
7971969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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