View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_62 (Length: 253)
Name: NF6860_low_62
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40131568 - 40131333
Alignment:
| Q |
1 |
cttcaaaacaaaaacttgtagcagaaaatcacgtgcaatcatgtgtagttgggaagatgtttttctacgcaaagtgttgattaaattatctgtcnnnnnn |
100 |
Q |
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| T |
40131568 |
cttcaaaacaaaaacttgtagcagaaaatcacgtgcaatcatgtgtagttgggaagatgtttttctacgcaaagtgttgattaaattatctgtctttttt |
40131469 |
T |
|
| Q |
101 |
nggtcacacgtattttttactgtagaaactttgattttaccttaaaatcttcacgtgtaatacatacaatttctttgttaacattaacaaagtgaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40131468 |
tggtcacacgtattttttactgtagaaactttgattttaccataaaatcttcacgtgtaatacatacaatttcttttttaacattaacaaagtgaagttt |
40131369 |
T |
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| Q |
201 |
tcannnnnnnatgaaagtttttgatcggttgtaaat |
236 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
40131368 |
tcatttttttatgaaagtttttgatcggttgtaaat |
40131333 |
T |
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