View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_65 (Length: 245)

Name: NF6860_low_65
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_65
NF6860_low_65
[»] chr2 (7 HSPs)
chr2 (19-241)||(410444-410666)
chr2 (21-207)||(821334-821520)
chr2 (86-195)||(973735-973844)
chr2 (51-195)||(965135-965279)
chr2 (21-235)||(1399988-1400199)
chr2 (29-207)||(1403734-1403912)
chr2 (96-207)||(957815-957926)
[»] chr3 (1 HSPs)
chr3 (21-208)||(45810142-45810329)
[»] chr6 (1 HSPs)
chr6 (21-202)||(10116409-10116590)
[»] chr5 (1 HSPs)
chr5 (85-202)||(36199331-36199445)
[»] chr7 (2 HSPs)
chr7 (21-207)||(12105508-12105694)
chr7 (86-200)||(28449506-28449617)
[»] chr1 (1 HSPs)
chr1 (25-137)||(48675120-48675232)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 410666 - 410444
Alignment:
Q  19 gtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410666 gtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaa 410567  T
Q  119 taaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  410566 taaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaacaaa 410467  T
Q  219 ttcggaatccacccaatattctt 241  Q
    ||||||||||||||||| |||||    
T  410466 ttcggaatccacccaattttctt 410444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 821520 - 821334
Alignment:
Q  21 agaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaata 120  Q
    |||||||||||| ||||  |||||| | ||||||| || ||| ||||| ||||||| | |||| |||||||||  ||||||||| |||||||| ||||||    
T  821520 agaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaata 821421  T
Q  121 aattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaa 207  Q
    ||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  821420 aatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggtttaatgaaacgcaa 821334  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 973735 - 973844
Alignment:
Q  86 tcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagt 185  Q
    |||||||| ||||||||||||| ||||  ||||||||| |||||||||||||||||  | ||||| |||||||| |||| |||||||  ||| |||||||    
T  973735 tcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagt 973834  T
Q  186 tgtaaggttt 195  Q
    ||||||||||    
T  973835 tgtaaggttt 973844  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 965135 - 965279
Alignment:
Q  51 ttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgt 150  Q
    |||||||||||||  |||| ||| |||| | || | |||||||  |||||||||||||||||  ||||||||| |||||| ||||||||||  | |||||    
T  965135 ttctactttagaccctttcgtgtagcaccacattgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgt 965234  T
Q  151 aggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttt 195  Q
     |||||||| |||| |||||||  ||| |||||||||||||||||    
T  965235 tggcctgcatatgcaaagtcccacatagtgcaagttgtaaggttt 965279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 1400199 - 1399988
Alignment:
Q  21 agaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaata 120  Q
    ||||||||||||||||||| |||||| ||||||| |||| | |  | || ||| |||| |||| | |||||||  |||||||||||||||||  ||||||    
T  1400199 agaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaaactcttgcattctgcagaata 1400100  T
Q  121 aattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaatt 220  Q
    ||  |||||||||||||| ||  | ||||| ||||| ||    | |||||||| ||| ||||||||||||||||||||||||  |||  || |||| |||    
T  1400099 aaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcatattgcaagttgtaaggtttaatgaaagacaacttggaacagatt 1400003  T
Q  221 cggaatccacccaat 235  Q
    | | |||||||||||    
T  1400002 caggatccacccaat 1399988  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 1403912 - 1403734
Alignment:
Q  29 ttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgc 128  Q
    |||||||||||||||||| ||||||| |||||| |  | |||||| |||| |||| | |||||||  ||||||||||||||| |  ||||||||  ||||    
T  1403912 ttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaaactcttgcattatccagaataaaccttgc 1403813  T
Q  129 taacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaa 207  Q
    |||||||||| ||  | | ||| || || |||   | |||||||| ||| |||||||||||||||||||||||| ||||    
T  1403812 taacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtttaatgaaaggcaa 1403734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 957815 - 957926
Alignment:
Q  96 taaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttt 195  Q
    ||||||||| |||||||| |||||||||  |||||| ||||  |||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||||||    
T  957815 taaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttt 957914  T
Q  196 aatgaaaagcaa 207  Q
    ||||||| ||||    
T  957915 aatgaaaggcaa 957926  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 45810142 - 45810329
Alignment:
Q  21 agaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaata 120  Q
    |||||||||||||||||| ||||||||| |||||| ||||||| ||||  || ||||| | || |||||||||  ||||||| |||||||||| ||||||    
T  45810142 agaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatagtttctaaaacttttgcattcttcagaata 45810241  T
Q  121 aattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaag 208  Q
    ||  ||||||||||||  |||  | |||||| |||||||||||| |||||||| ||| ||||||| || ||||||||||||| |||||    
T  45810242 aaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgaggtttaatgaaaggcaag 45810329  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 10116409 - 10116590
Alignment:
Q  21 agaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaata 120  Q
    |||||||||||||||||||||||| | |||||||| ||||||| |||||  |   ||| |||| | |||||||  ||||||||| |||||||  ||||||    
T  10116409 agaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaaactctcgcattctcaagaata 10116508  T
Q  121 aattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaa 202  Q
    ||  | |||| |||||||||| ||   |||||||||| |||| | || ||||| ||| | ||||||||||||||| ||||||    
T  10116509 aacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatgaaa 10116590  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 36199445 - 36199331
Alignment:
Q  85 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaag 184  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||||||||| ||||||    
T  36199445 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcccgaatagtgcaag 36199349  T
Q  185 ttgtaaggtttaatgaaa 202  Q
    || |||| | ||||||||    
T  36199348 ttctaagatataatgaaa 36199331  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 12105694 - 12105508
Alignment:
Q  21 agaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaata 120  Q
    |||||| |||| ||| |||| |||| ||||||||| || ||||||||||  |  |||| |||| | |||| ||  ||||||| ||| |||||| ||||||    
T  12105694 agaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttctaaaactgttgaattcttcagaata 12105595  T
Q  121 aattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaa 207  Q
    ||||||||||||||||||||| ||   ||||||||| ||| ||| ||||| || ||  | |||||| |||||||| |||||| ||||    
T  12105594 aattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttgatgaaaggcaa 12105508  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 28449506 - 28449617
Alignment:
Q  86 tcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagt 185  Q
    |||| ||| |||||||||||||||| || |||||| || |||||| |||||||| |   | ||||||| || ||||||| |||||||||||| |||||||    
T  28449506 tcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtca---ttttgtaggtctacaaatgcaaagtcccgaatagtgcaagt 28449602  T
Q  186 tgtaaggtttaatga 200  Q
    |||||| | ||||||    
T  28449603 tgtaagatgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 48675120 - 48675232
Alignment:
Q  25 gcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaatt 124  Q
    |||||||||||||||||||||   ||||||| || ||  || | ||||| || | | || ||||||||| |||||||| ||||||| ||||||||| ||     
T  48675120 gcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcatagtttgtaaaacttttgcattatttagaatatatc 48675219  T
Q  125 ttgctaacataat 137  Q
    |||||||||||||    
T  48675220 ttgctaacataat 48675232  T

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