View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_67 (Length: 241)
Name: NF6860_low_67
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43925920 - 43926143
Alignment:
| Q |
1 |
aatatatatacaacatcacaaatagctacagcttgctttggataatgcctcaatatcatgaagacagtcacaaactataaaatgtatacctgccaattgc |
100 |
Q |
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| T |
43925920 |
aatatatatacaacatcacaaatagctacagcttgctttggataatgcctcaatatcatgaagacagtcacaaactataaaatgtatacctgccaattgc |
43926019 |
T |
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| Q |
101 |
atcatatgtgccagcaagattgctatatacgccaagagtttcagggtgacaaggaccatactcttgttccaaaacaatcttcgcttcttcgaataatttg |
200 |
Q |
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| T |
43926020 |
atcatatgtgccagcaagattgctatatacgccaagagtttcagggtgacaaggaccatactcttgttccaaaacaatcttcgcttcttcgaataatttg |
43926119 |
T |
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| Q |
201 |
acagcctcactcaaggcgttaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
43926120 |
acagcctcactcaaggcgttaagt |
43926143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 35114981 - 35115097
Alignment:
| Q |
82 |
atgtatacctgccaattgcatcatatgtgccagcaagattgctatatacgccaagagtttcagggtgacaaggaccatactcttgttccaaaacaatctt |
181 |
Q |
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| T |
35114981 |
atgtgtaccttccaattgcgtcgtacgtgcctgcaagattactatatactccaagcgtttcagggtgataaggccccaactcatgttccaaaacactctt |
35115080 |
T |
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| Q |
182 |
cgcttcttcgaataatt |
198 |
Q |
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| T |
35115081 |
tgcttcctcaaataatt |
35115097 |
T |
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