View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_69 (Length: 238)
Name: NF6860_low_69
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 7446087 - 7446267
Alignment:
| Q |
37 |
atgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaacttgagtcagagaagaaggataggcttg |
136 |
Q |
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| T |
7446087 |
atgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaacttgagtcagagaagaaggataggcttg |
7446186 |
T |
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| Q |
137 |
caatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaacaagaaacttg |
217 |
Q |
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| T |
7446187 |
caatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaacaagaaacttg |
7446267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 7461031 - 7461211
Alignment:
| Q |
37 |
atgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaacttgagtcagagaagaaggataggcttg |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461031 |
atgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaacttgagtcagagaagaaggataggcttg |
7461130 |
T |
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| Q |
137 |
caatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaacaagaaacttg |
217 |
Q |
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| T |
7461131 |
caatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaacaagaaacttg |
7461211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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