View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_72 (Length: 238)
Name: NF6860_low_72
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6112617 - 6112846
Alignment:
| Q |
1 |
caggacaccatatatagtttaacatgcagcaaactccaaaggatccataatccatatatgtggcaaacttttgactaagatgtgaacgttaatctactcc |
100 |
Q |
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| T |
6112617 |
caggacaccatatatagtttaacatgcagcaaactccaaaggatccataatccatatatgtggcaaacttttgactaagatgtgaacgttaatctactcc |
6112716 |
T |
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| Q |
101 |
taagtcctaacatattcaacagtttaaaacaaacaaaactttcctttattttgaattcatatcaaatgctttataccaaaatcctcacaaagagaacggt |
200 |
Q |
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| T |
6112717 |
t-------aacatattcaatagtttaaaacaaacaaaactttcctttattttgaattcatatcaaatgctttataccaaaatcctcacaaagagaacagt |
6112809 |
T |
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| Q |
201 |
ttattaagttaaatcatgttagaaatgatgtccatct |
237 |
Q |
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| T |
6112810 |
ttattaagttaaatcatgttagaaatgatgttcatct |
6112846 |
T |
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