View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_low_73 (Length: 234)
Name: NF6860_low_73
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_73 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4198086 - 4197867
Alignment:
| Q |
1 |
aaaaattcatcagcgtttgagcatggtttaactacagattccaaatgtagggacagttttctattatgaaatttgaaattatctgaaattagtactacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4198086 |
aaaaattcatcagcgtttgagcatggtttaactacagattccaaatgtagggacagttttctattatgaaatttgaaattatctgaaattagtactacat |
4197987 |
T |
|
| Q |
101 |
attctcagagatgagtcgcatctttttaacagtgagaatatcacacttctgaatataagagatattaatgcaaacccaaagtaaattaactagggagggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4197986 |
attctcagagatgagtcgcatctttttaacagtgagaatatcacacttctgaatataagagatattaatgcaaacccaaagtaaattaactagggagggc |
4197887 |
T |
|
| Q |
201 |
cttgaagtcgaccaacttta |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4197886 |
cttgaagtcgaccaacttta |
4197867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University