View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6860_low_79 (Length: 224)
Name: NF6860_low_79
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_79 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36224183 - 36223962
Alignment:
| Q |
1 |
tattgatggttcaaaccacaactctaaatcaagcattctccatgctttcccttgttataataatattccgtacaatatggaccatacttactgcgatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
36224183 |
tattgatggttcaaaccacaactctaaatcaagcattctccatgctttcccttgttataataatattccgtacaatatggaccatacttactacaatagt |
36224084 |
T |
|
| Q |
101 |
aagttaataaccgcatgcttatgttgcttcaaatttttatatataaagactaaagtacataaaaattattagattagaacataaacaagttcaaagatga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36224083 |
aag-taataaccgcatgcttatgttgcttcaaatttttatatataaagactaaagtacataaaaattattagattagaacataaac-agttcaaagatga |
36223986 |
T |
|
| Q |
201 |
ctgatcaacttagaactgattcca |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36223985 |
ctgatcaacttagaactgattcca |
36223962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University