View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_8 (Length: 572)
Name: NF6860_low_8
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Complemental strand, 41698067 - 41697508
Alignment:
| Q |
10 |
gtgagcagattttaattattaatttcaagaaggaaattcttgcatttgttccgaaagaaggattgaaaagtttagaagatgattcctcaaacgagtgttc |
109 |
Q |
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| T |
41698067 |
gtgagcagattttacttattaatttcaagaaggaaattcttgcatttgttccgaaagaaggattgaaaagtttagaagatgattcctcaaatgagtgttc |
41697968 |
T |
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| Q |
110 |
tacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattc |
209 |
Q |
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| T |
41697967 |
tacagttcttgttgttgatgaatctatggcaattgcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattc |
41697868 |
T |
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| Q |
210 |
atattttgttctcgaattcaaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaagattgccaaa |
309 |
Q |
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| T |
41697867 |
atattttgttctcgaattcaaataaaattgctttataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaatattgccaaa |
41697768 |
T |
|
| Q |
310 |
tgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaa |
409 |
Q |
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| T |
41697767 |
tgggctattctttgttgcttatacatatgctggggagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaa |
41697668 |
T |
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| Q |
410 |
tgatctcttaatattaaagtaagtattaagaacaaaattttctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgt |
509 |
Q |
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| T |
41697667 |
tgatctcttaatattaaagtaagtattaagaacaaaatttgctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgt |
41697568 |
T |
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| Q |
510 |
agctggtgggattgggcgcaacttcatttcgcgaggcattcttgaagccactggcattga |
569 |
Q |
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| T |
41697567 |
agctggtgggattgggcgcaacttcatttcgcgaggcattcttgaagccactggcattga |
41697508 |
T |
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