View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_81 (Length: 223)
Name: NF6860_low_81
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_81 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 32236136 - 32236344
Alignment:
| Q |
18 |
caagaactgcaagtcaagttgctagtcatgctcaaaagcatttccttcaccaa---gatgttacatcaaaaaagacttatnnnnnnngaagcaacttcta |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
32236136 |
caagaactgcaagtcaagttgctagccatgctcaaaagcatttccttcaccaattagatggtacatcaaaaaagacttataaaaaaagaagcaacttcta |
32236235 |
T |
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| Q |
115 |
cattacctcattgaagggaagttccaaacctcttctcaataaggacaacattccatctcctcctacctcatgggatggaaatttccaccctcttctctat |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32236236 |
cattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttctacctcatgggatggaaatttccaccctcttctctat |
32236335 |
T |
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| Q |
215 |
aaggacaac |
223 |
Q |
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||||||||| |
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| T |
32236336 |
aaggacaac |
32236344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 32248330 - 32248538
Alignment:
| Q |
18 |
caagaactgcaagtcaagttgctagtcatgctcaaaagcatttccttcaccaa---gatgttacatcaaaaaagacttatnnnnnnngaagcaacttcta |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |
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| T |
32248330 |
caagaactgcaagtcaagttgctagccatgctcaaaagcatttccttcaccaattagatggtacatcaaaaaagacttataaaaaaagaagcaacttcta |
32248429 |
T |
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| Q |
115 |
cattacctcattgaagggaagttccaaacctcttctcaataaggacaacattccatctcctcctacctcatgggatggaaatttccaccctcttctctat |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32248430 |
cattacctcattgaagggaaattccaaacctcttctcaataaggacaacattccatctccttctacctcatgggatggaaatttccaccctcttctctat |
32248529 |
T |
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| Q |
215 |
aaggacaac |
223 |
Q |
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||||||||| |
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| T |
32248530 |
aaggacaac |
32248538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 32254532 - 32254733
Alignment:
| Q |
22 |
aactgcaagtcaagttgctagtcatgctcaaaagcatttccttcaccaagatgttacatcaaaaaagacttatnnnnnnngaagcaacttctacattacc |
121 |
Q |
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|||| |||||||||||| ||| |||| |||||||||||||||||| || || |||||||||||| ||| | ||||||||| |||||||| |
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| T |
32254532 |
aactccaagtcaagttggtagccatgatcaaaagcatttccttcatcatagtgctacatcaaaaaaaactaaaagaaa---aagcaactttgacattacc |
32254628 |
T |
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| Q |
122 |
tcattgaagggaagttccaaacctcttctcaataaggacaacattccat---ctcctcctacctcatgggatggaaatttccaccctcttctctataagg |
218 |
Q |
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|||||||| ||| |||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
32254629 |
tcattgaatggagattccaaccctcttctctataaggacaacattccatcccctcctcctcctacatgggatggaaatttccaccctcttctctataagg |
32254728 |
T |
|
| Q |
219 |
acaac |
223 |
Q |
| |
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||||| |
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| T |
32254729 |
acaac |
32254733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 23193907 - 23193955
Alignment:
| Q |
171 |
ctcctcctacctcatgggatggaaatttccaccctcttctctataagga |
219 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
23193907 |
ctcctcataccttatgggatggaaatttccaacctcttctctataagga |
23193955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37027724 - 37027682
Alignment:
| Q |
181 |
ctcatgggatggaaatttccaccctcttctctataaggacaac |
223 |
Q |
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| T |
37027724 |
ctcatgggatggaaattttcaccctcttctctatagggacaac |
37027682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 23193760 - 23193803
Alignment:
| Q |
27 |
caagtcaagttgctagtcatgctcaaaagcatttccttcaccaa |
70 |
Q |
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| T |
23193760 |
caagtcaagttgctagccatgctcaaaagactttccttcaccaa |
23193803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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