View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6860_low_86 (Length: 210)

Name: NF6860_low_86
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6860_low_86
NF6860_low_86
[»] chr7 (22 HSPs)
chr7 (1-104)||(767136-767239)
chr7 (55-105)||(41965111-41965161)
chr7 (55-104)||(41965776-41965825)
chr7 (5-106)||(24874527-24874628)
chr7 (2-99)||(27917700-27917797)
chr7 (55-104)||(767965-768014)
chr7 (60-105)||(7329072-7329117)
chr7 (55-104)||(33261412-33261461)
chr7 (56-105)||(42817797-42817846)
chr7 (60-104)||(42818557-42818601)
chr7 (4-106)||(24873749-24873851)
chr7 (57-106)||(28007155-28007204)
chr7 (67-104)||(30581277-30581314)
chr7 (56-100)||(36611555-36611599)
chr7 (57-108)||(18569020-18569071)
chr7 (59-105)||(46491691-46491737)
chr7 (62-107)||(2403447-2403492)
chr7 (56-97)||(3850366-3850407)
chr7 (55-104)||(27918609-27918658)
chr7 (55-104)||(41617980-41618029)
chr7 (56-104)||(3314955-3315003)
chr7 (68-104)||(17114145-17114181)
[»] chr3 (23 HSPs)
chr3 (1-92)||(14746847-14746938)
chr3 (2-46)||(35982553-35982597)
chr3 (56-104)||(9831262-9831310)
chr3 (56-104)||(15287567-15287615)
chr3 (4-104)||(43453439-43453539)
chr3 (1-104)||(14746041-14746144)
chr3 (8-104)||(43454114-43454209)
chr3 (56-98)||(51920720-51920762)
chr3 (14-104)||(42020844-42020934)
chr3 (57-109)||(9830567-9830619)
chr3 (56-104)||(18745370-18745418)
chr3 (67-107)||(54753574-54753614)
chr3 (57-104)||(20807937-20807984)
chr3 (56-99)||(54308458-54308501)
chr3 (67-105)||(16076209-16076247)
chr3 (4-42)||(41418822-41418860)
chr3 (55-105)||(41419618-41419668)
chr3 (72-114)||(46595871-46595912)
chr3 (62-104)||(47571945-47571987)
chr3 (57-99)||(47677526-47677568)
chr3 (67-104)||(55338-55375)
chr3 (61-102)||(29516554-29516595)
chr3 (61-105)||(53346501-53346545)
[»] chr5 (16 HSPs)
chr5 (107-163)||(24373893-24373949)
chr5 (107-163)||(24288272-24288329)
chr5 (56-106)||(39466883-39466933)
chr5 (55-104)||(23253485-23253534)
chr5 (69-102)||(39467941-39467974)
chr5 (56-104)||(39937906-39937954)
chr5 (57-104)||(7489129-7489176)
chr5 (57-104)||(24565573-24565620)
chr5 (57-104)||(24606609-24606656)
chr5 (55-105)||(35524121-35524171)
chr5 (56-105)||(16195129-16195178)
chr5 (67-104)||(23257319-23257356)
chr5 (67-104)||(27345930-27345967)
chr5 (59-104)||(40372163-40372208)
chr5 (55-95)||(4095873-4095913)
chr5 (55-107)||(38406397-38406449)
[»] chr2 (7 HSPs)
chr2 (56-104)||(44296860-44296908)
chr2 (56-107)||(20606921-20606972)
chr2 (55-104)||(4716872-4716921)
chr2 (67-103)||(44297425-44297461)
chr2 (55-104)||(7754012-7754061)
chr2 (68-109)||(44986807-44986848)
chr2 (62-106)||(127741-127785)
[»] chr6 (5 HSPs)
chr6 (4-105)||(2138476-2138577)
chr6 (1-104)||(709322-709425)
chr6 (55-104)||(10966379-10966428)
chr6 (56-107)||(13084879-13084930)
chr6 (67-107)||(5312238-5312278)
[»] chr8 (18 HSPs)
chr8 (4-92)||(26132081-26132169)
chr8 (4-104)||(36402973-36403073)
chr8 (57-105)||(42663998-42664046)
chr8 (55-105)||(26847096-26847146)
chr8 (55-104)||(5434032-5434081)
chr8 (4-104)||(44376643-44376743)
chr8 (57-106)||(22632969-22633018)
chr8 (62-105)||(202576-202619)
chr8 (62-105)||(317413-317456)
chr8 (57-99)||(22632327-22632369)
chr8 (56-102)||(36180689-36180735)
chr8 (67-105)||(42094755-42094793)
chr8 (55-104)||(36402201-36402250)
chr8 (56-104)||(4402287-4402335)
chr8 (55-99)||(10333630-10333674)
chr8 (56-104)||(19220913-19220961)
chr8 (56-104)||(36182121-36182169)
chr8 (60-104)||(42663277-42663321)
[»] chr4 (22 HSPs)
chr4 (4-107)||(21281109-21281212)
chr4 (60-108)||(34941498-34941546)
chr4 (56-108)||(36791791-36791843)
chr4 (55-99)||(53778414-53778458)
chr4 (4-104)||(21280035-21280135)
chr4 (56-98)||(26354232-26354274)
chr4 (60-106)||(34450813-34450859)
chr4 (67-104)||(42792775-42792812)
chr4 (55-99)||(18363652-18363696)
chr4 (57-105)||(24666853-24666901)
chr4 (55-99)||(36599232-36599276)
chr4 (60-104)||(47157383-47157427)
chr4 (60-104)||(52129421-52129465)
chr4 (57-104)||(25055109-25055156)
chr4 (57-104)||(35605991-35606038)
chr4 (68-103)||(47156634-47156669)
chr4 (55-104)||(13924793-13924842)
chr4 (56-105)||(14527576-14527625)
chr4 (67-104)||(21837389-21837426)
chr4 (56-104)||(6056999-6057047)
chr4 (57-97)||(25725809-25725849)
chr4 (55-95)||(53777830-53777870)
[»] chr1 (13 HSPs)
chr1 (4-104)||(13416283-13416383)
chr1 (57-106)||(26240872-26240921)
chr1 (59-104)||(31109239-31109284)
chr1 (59-104)||(31116687-31116732)
chr1 (55-99)||(5491335-5491379)
chr1 (62-104)||(16449555-16449597)
chr1 (56-98)||(16450465-16450507)
chr1 (62-104)||(16459129-16459171)
chr1 (56-98)||(16460041-16460083)
chr1 (57-106)||(26240112-26240161)
chr1 (56-104)||(12449312-12449360)
chr1 (57-105)||(24848427-24848475)
chr1 (67-107)||(27745553-27745593)
[»] scaffold0006 (2 HSPs)
scaffold0006 (55-100)||(285182-285227)
scaffold0006 (4-81)||(285958-286035)
[»] scaffold0627 (1 HSPs)
scaffold0627 (56-98)||(6470-6512)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 767239 - 767136
Alignment:
Q  1 catttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       | || |||||| |||||||||||||||||||||||||||||||||     
T  767239 catttttaattcgaataaatctgaaccatgtatttaatctaacggtgtttttttcatgatccaccggtgagggacttaattggaccctcaccctagaatc 767140  T
Q  101 cacc 104  Q
    ||||    
T  767139 cacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 41965161 - 41965111
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  41965161 cgtggtccaccaatgagggacttaattggaccctcaccctagaatccacct 41965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 41965776 - 41965825
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  41965776 cgtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 24874527 - 24874628
Alignment:
Q  5 tttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||| |||||||||| |||||| ||||| ||||||||||        |||||||||||  |||||||| |||||| |||||||||||||||| ||||    
T  24874527 tttaatttgaataaatcttaaccatctattttatctaacggtatttttctcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T
Q  105 ta 106  Q
    ||    
T  24874627 ta 24874628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 27917797 - 27917700
Alignment:
Q  2 atttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    |||||||||| ||||||||||||| ||||||||||||  ||| |||        ||||||||  ||||||||||||||||||| ||||||||||||||    
T  27917797 atttttaatttgaataaatctgaagcatgtatttaattcaacagtgttttttttgtggtccattagtgagggacttaattggatcctcaccctagaat 27917700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 767965 - 768014
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  767965 cgtggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 7329072 - 7329117
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  7329072 tccaccagtgagggacttaattgaaccctcaccctagaagtcacct 7329117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 33261412 - 33261461
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  33261412 cgtggtccatcagtgagggacttaattggaccctcatcctagaatccacc 33261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 42817846 - 42817797
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  42817846 gtggtccaccgatgagggacttaattggaccatcaccctagaattcacct 42817797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 24873851 - 24873749
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| |||||||||| |||||  |||||||||||  ||||       | ||||||||   |||||||| ||||||||||||||||||||||| |||    
T  24873851 ttttaatttgaataaatctaaaccacttatttaatctattggtgtttttttcatggtccactgatgagggacctaattggaccctcaccctagaatccac 24873752  T
Q  104 cta 106  Q
    |||    
T  24873751 cta 24873749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 28007204 - 28007155
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  28007204 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccta 28007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 30581277 - 30581314
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30581277 gtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 36611599 - 36611555
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaatt 100  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||    
T  36611599 gtggttcaccggtgagggacttaattgaaccctcaccctagaatt 36611555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 18569020 - 18569071
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacctata 108  Q
    ||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||    
T  18569020 tggtccaccggtgagggatttaataggaccttcaccctagaatccacctata 18569071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 46491691 - 46491737
Alignment:
Q  59 gtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  46491691 gtccaccggtgagggacttagttgaaccctcaccctagaatccacct 46491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 2403447 - 2403492
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    |||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  2403447 caccggtgagggacttagttgaaccctcatcctagaattcacctat 2403492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 3850366 - 3850407
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctaga 97  Q
    |||||||||| |||||||| |||||||| |||||||||||||    
T  3850366 gtggtccaccggtgagggatttaattggcccctcaccctaga 3850407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 27918609 - 27918658
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| |||||| ||||||||| |||||||||||||| |||| ||||||||    
T  27918609 cgtgatccaccggtgagggacctaattggaccctcatcctaaaattcacc 27918658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 41617980 - 41618029
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||||| ||||    
T  41617980 cgtggtccactggtgagagacttaattggaccctcactctagaatccacc 41618029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 3315003 - 3314955
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||| |||| |||||||||||||||| ||||||||| |||||| ||||    
T  3315003 gtggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 17114181 - 17114145
Alignment:
Q  68 tgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 14746847 - 14746938
Alignment:
Q  1 catttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcacc 92  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||  |||||||||||||||||||||||||    
T  14746847 catttttaattcgaataaatttgaaccatgtatttaatctaacggtgtttttttcgtggtccaccgatgagggacttaattggaccctcacc 14746938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 35982597 - 35982553
Alignment:
Q  2 atttttaattcgaataaatctgaaccatgtatttaatctaacggt 46  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35982597 atttttaattcgaataaatctgaaccatgtatttaatctaacggt 35982553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9831262 - 9831310
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  9831262 gtggtccaccagtgagggacttaattggaccctcaccccagaatccacc 9831310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 15287615 - 15287567
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  15287615 gtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 43453539 - 43453439
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    ||||||||  ||||||| |||||||| |||||||||||  |||        ||||||||| | |||||||| |||||||||||||||||||||||| |||    
T  43453539 ttttaatttaaataaatttgaaccatctatttaatctattggtatttttctcgtggtccagcggtgagggatttaattggaccctcaccctagaatccac 43453440  T
Q  104 c 104  Q
    |    
T  43453439 c 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14746144 - 14746041
Alignment:
Q  1 catttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaatt 100  Q
    |||||||||||  ||||||||||| |||| ||||| |||||  || |       ||||||||||| | |||||| ||||||||||||||||||||||||     
T  14746144 catttttaatttaaataaatctgatccatctatttcatctagtggcgtttttttcgtggtccaccggggagggatttaattggaccctcaccctagaatc 14746045  T
Q  101 cacc 104  Q
    ||||    
T  14746044 cacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 43454114 - 43454209
Alignment:
Q  8 aattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| ||||||||||||||||| ||||| ||| | |||||       ||||||||||  ||||||||| ||||||||||||||||||||||| ||||    
T  43454114 aatttgaataaatctgaaccatctattttatccatcggtgttttct-cgtggtccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 51920762 - 51920720
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaa 98  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  51920762 gtggtccatcggtgagggacttaattggaccctcaccctagaa 51920720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 42020844 - 42020934
Alignment:
Q  14 aataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||| |||||||||||  |||        |||| |||||| | ||| ||| ||||||||||||||||||||||||||||    
T  42020844 aataaatctgaaccatctatttaatctattggtatttttttcgtgatccaccggcgagagacctaattggaccctcaccctagaattcacc 42020934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 9830619 - 9830567
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacctataa 109  Q
    ||||||||| |||||||||||||||| |||||||||| ||||| ||| |||||    
T  9830619 tggtccaccggtgagggacttaattgaaccctcacccgagaatccacttataa 9830567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 18745370 - 18745418
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||| |||| ||||||||||| |||| |||||||||||||||||||||    
T  18745370 gtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 54753614 - 54753574
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  54753614 gtgagggacttaattgaaccctcaccgtagaattcacctat 54753574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 20807984 - 20807937
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| |||| |||||||||||||||| |||||||||||||||| ||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 54308501 - 54308458
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||| |||| |||||||||||||||| ||||||||||||||||    
T  54308501 gtggttcaccggtgagggacttaattgaaccctcaccctagaat 54308458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 16076247 - 16076209
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  16076247 gtgagggacctaattggaccctcaccctagaatccacct 16076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 41418860 - 41418822
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaa 42  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  41418860 ttttaatttgaataaatctgaaccatttatttaatctaa 41418822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 41419618 - 41419668
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||| ||||||||| ||||||| ||||||| ||||||| |||||    
T  41419618 cgtggtccaccggtgagggacctaattggcccctcacactagaatccacct 41419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 46595871 - 46595912
Alignment:
Q  72 ggacttaattggaccctcaccctagaattcacctataagatat 114  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  46595871 ggacttaattggaccctcaccctagaatccacct-taagatat 46595912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 47571945 - 47571987
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| ||||||||||||||||  ||||||||||||||||||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 47677568 - 47677526
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||    
T  47677568 tggttcaccagtgagggacttaattgaaccctcatcctagaat 47677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 55338 - 55375
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  55338 gtgagggacttaattgaaccctcatcctagaattcacc 55375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 29516554 - 29516595
Alignment:
Q  61 ccaccagtgagggacttaattggaccctcaccctagaattca 102  Q
    ||||| |||||||||||||||| ||||||||| |||||||||    
T  29516554 ccaccggtgagggacttaattgaaccctcaccgtagaattca 29516595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 53346501 - 53346545
Alignment:
Q  61 ccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||| |||||||||||||||| ||||||||  ||||||||||||    
T  53346501 ccaccggtgagggacttaattgaaccctcactgtagaattcacct 53346545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 24373893 - 24373949
Alignment:
Q  107 taagatatggtaaaattgttctttaattttattgttaaggctcattttcaattagta 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24373893 taagatatggtaaaattgttctttaattttattgttaaggctcattttcaattagta 24373949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 24288329 - 24288272
Alignment:
Q  107 taagatatggtaaaattgttcttt-aattttattgttaaggctcattttcaattagta 163  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24288329 taagatatggtaaaattgttcttttaattttattgttaaggctcattttcaattagta 24288272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 39466933 - 39466883
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39466933 gtggtccaccggtgagggacttaattggaccctcaccctagaattcaccta 39466883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 23253485 - 23253534
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  23253485 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 39467974 - 39467941
Alignment:
Q  69 gagggacttaattggaccctcaccctagaattca 102  Q
    ||||||||||||||||||||||||||||||||||    
T  39467974 gagggacttaattggaccctcaccctagaattca 39467941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 39937906 - 39937954
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| ||||||||||||| || |||||||||||||||| ||||    
T  39937906 gtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 7489129 - 7489176
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||||||||||||| || ||||||||||| |||||| ||||    
T  7489129 tggtccaccagtgagggacttgataggaccctcaccttagaatccacc 7489176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 24565620 - 24565573
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  24565620 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 24606656 - 24606609
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  24606656 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 35524171 - 35524121
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||| |||||||||||||||| || |||| |||||||| |||||    
T  35524171 cgtggtccaccggtgagggacttaattgaactctcatcctagaatccacct 35524121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 16195129 - 16195178
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||| ||||||||| |||||||||||  ||||||||||||||| |||||    
T  16195129 gtggtacaccagtgatggacttaattgatccctcaccctagaatccacct 16195178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 23257356 - 23257319
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  23257356 gtgagggacttaattggaccctcactctagaatccacc 23257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 27345930 - 27345967
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  27345930 gtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 40372163 - 40372208
Alignment:
Q  59 gtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||| |||||| ||||||||| |||||||||||||||| ||||    
T  40372163 gtccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 4095873 - 4095913
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcacccta 95  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  4095873 cgtggtccatcggtgagggatttaattggaccctcacccta 4095913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 38406449 - 38406397
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    ||||||||| ||||||||| ||||||||||| |||| |||| ||| |||||||    
T  38406449 cgtggtccatcagtgaggggcttaattggactctcatcctaaaatccacctat 38406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 44296908 - 44296860
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44296908 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 44296860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20606921 - 20606972
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    ||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  20606921 gtggttcaccggtgagggacttaattgaaccctcaccctagaattcacctat 20606972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 4716872 - 4716921
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||||||| | | |||||||||||||||||||||||| ||||    
T  4716872 cgtggtccaccagtgaagaatttaattggaccctcaccctagaatccacc 4716921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 44297425 - 44297461
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||||||||||| ||||||||||||||||||||    
T  44297425 gtgagggacttaattgaaccctcaccctagaattcac 44297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 7754061 - 7754012
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| |||||| | ||||||| ||||||||||||||||||||||| ||||    
T  7754061 cgtgatccaccggggagggacctaattggaccctcaccctagaatccacc 7754012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 44986848 - 44986807
Alignment:
Q  68 tgagggacttaattggaccctcaccctagaattcacctataa 109  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  44986848 tgagggacttaattgatccctcaccctagaattcacccataa 44986807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 127741 - 127785
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    |||| |||| ||||||||||| |||||||||||||||| ||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccaccta 127785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 2138577 - 2138476
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| |||||||||| |||||| |||||||| ||  |||        ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  2138577 ttttaatttgaataaatctcaaccatctatttaatttattggtatttttctcgtggtccaccggtgagggacctaattggaccctcaccctagaattcac 2138478  T
Q  104 ct 105  Q
    ||    
T  2138477 ct 2138476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 709425 - 709322
Alignment:
Q  1 catttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaatt 100  Q
    ||||||||||| ||||||||||||||||| |||||||||||  |||        |||| |||| | ||||||||  |||||||||||||| |||||||||    
T  709425 catttttaatttgaataaatctgaaccatctatttaatctattggtatttttctcgtgatccatcggtgagggatctaattggaccctcatcctagaatt 709326  T
Q  101 cacc 104  Q
    ||||    
T  709325 cacc 709322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 10966379 - 10966428
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||| ||||    
T  10966379 cgtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 13084879 - 13084930
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    ||||| |||| ||||| |||||| ||| ||||||||||||||||||||||||    
T  13084879 gtggtacaccggtgagagacttagttgaaccctcaccctagaattcacctat 13084930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 5312278 - 5312238
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    |||||||||||||||| ||||||||  ||||||||||||||    
T  5312278 gtgagggacttaattgaaccctcactgtagaattcacctat 5312238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 26132081 - 26132169
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcacc 92  Q
    ||||||||  ||||||||| |||||| ||||| |||||||||||       ||||||||||||||||||||| ||||||||||||||||    
T  26132081 ttttaatttcaataaatcttaaccatctattttatctaacggtgtttttctcgtggtccaccagtgagggacctaattggaccctcacc 26132169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 36402973 - 36403073
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| |||||||||| |||||| ||||| ||||||| |||       ||||||||||| ||||||||| ||||||||||||||| ||||||| |||    
T  36402973 ttttaatttgaataaatcttaaccatctattttatctaactgtgtttttctcgtggtccaccggtgagggacctaattggaccctcactctagaatccac 36403072  T
Q  104 c 104  Q
    |    
T  36403073 c 36403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 42663998 - 42664046
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  42663998 tggtccaccagtgagggacttaattgaaccctcaccctaaaattcacct 42664046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 26847146 - 26847096
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  26847146 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacct 26847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 5434081 - 5434032
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  5434081 cgtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 44376743 - 44376643
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| ||||||||||||||||| |||||||| ||  |||        |||||||||||  |||||||| ||||||||||||| ||||||||| |||    
T  44376743 ttttaatttgaataaatctgaaccatctatttaatttattggtatttttttcgtggtccaccgatgagggacgtaattggaccctcgccctagaatccac 44376644  T
Q  104 c 104  Q
    |    
T  44376643 c 44376643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 22632969 - 22633018
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  22632969 tggtccaccggtgagggacttaattgatccctcaccctagaatccaccta 22633018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 202619 - 202576
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacct 202576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 317456 - 317413
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacct 317413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 22632369 - 22632327
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  22632369 tggtccaccggtgagggacttaattgatccctcaccctagaat 22632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 36180735 - 36180689
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattca 102  Q
    ||||| |||| |||||||||||||||  |||||||||||||||||||    
T  36180735 gtggttcaccggtgagggacttaattaaaccctcaccctagaattca 36180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 42094755 - 42094793
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  42094755 gtgagggacttaattgatccctcaccctagaattcacct 42094793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 36402250 - 36402201
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||    
T  36402250 cgtggtccaccggtgtgggacctaattggaccctcaccctaaaatccacc 36402201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 4402287 - 4402335
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||| |||| |||||||||||||| | |||||||||||||||| ||||    
T  4402287 gtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 10333630 - 10333674
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||||  ||||||||| |||||||||||||||| ||||||    
T  10333630 cgtggtccactggtgagggacctaattggaccctcaccttagaat 10333674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 19220961 - 19220913
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||| ||| |||| ||||||||||| ||||||| |||||||||||||    
T  19220961 gtggtctaccggtgacggacttaattgaaccctcatcctagaattcacc 19220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 36182121 - 36182169
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||| |||| |||||||||||||||| |||||| || |||||||||||    
T  36182121 gtggttcaccggtgagggacttaattgaaccctcgccatagaattcacc 36182169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 42663321 - 42663277
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||    
T  42663321 tccaccggtgagagacttaattggactctcaccctagaatccacc 42663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 21281109 - 21281212
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| |||||||| | |||||| ||||| |||||||||||       |||||||||||  |||||||  ||||||||||||||||||||||| |||    
T  21281109 ttttaatttgaataaattttaaccatctattttatctaacggtgtttttctcgtggtccaccgatgagggatctaattggaccctcaccctagaatccac 21281208  T
Q  104 ctat 107  Q
    ||||    
T  21281209 ctat 21281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 34941546 - 34941498
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacctata 108  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  34941546 tccactagtgagggacttaattgaaccctcaccctagaatccacctata 34941498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 36791843 - 36791791
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacctata 108  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||||||||||    
T  36791843 gtggttcaccagtgagaaacttaattggactctcaccctagaattcacctata 36791791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 53778414 - 53778458
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  53778414 cgtggtccaccggtgagggacttaaatggaccctcaccctagaat 53778458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 21280135 - 21280035
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| |||| ||||| |||||| |||||||||||  ||||       ||| |||||||||| |||||| |||||||||||||| |||||||| |||    
T  21280135 ttttaatttgaatgaatctaaaccatttatttaatctattggtgtttttttcgtagtccaccagtaagggacctaattggaccctcatcctagaatccac 21280036  T
Q  104 c 104  Q
    |    
T  21280035 c 21280035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 26354232 - 26354274
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaa 98  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  26354232 gtggtccacctgtgagggacttaattgaaccctcaccctagaa 26354274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 34450859 - 34450813
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcaccta 34450813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 42792812 - 42792775
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42792812 gtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 18363652 - 18363696
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  18363652 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaat 18363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 24666853 - 24666901
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||||||||| |||||||||||||| |||||||||||| ||| |||||    
T  24666853 tggtccaccagggagggacttaattgaaccctcaccctataatccacct 24666901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 36599276 - 36599232
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  36599276 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaat 36599232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 47157383 - 47157427
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||    
T  47157383 tccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 52129465 - 52129421
Alignment:
Q  60 tccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 25055156 - 25055109
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| ||||| ||||||||| |||||||||||||||| ||||    
T  25055156 tggtccaccaatgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 35606038 - 35605991
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| |||||||||||||||  ||||||||||||||| ||||    
T  35606038 tggtccaccaatgagggacttaattgctccctcaccctagaatccacc 35605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 47156669 - 47156634
Alignment:
Q  68 tgagggacttaattggaccctcaccctagaattcac 103  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47156669 tgagggacttaattgaaccctcaccctagaattcac 47156634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 13924842 - 13924793
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||||||| |||||||| |||||||  ||||||||||||||| ||||    
T  13924842 cgtggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 14527576 - 14527625
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    ||||| |||| ||||||||||||||||  ||||||||||||||| |||||    
T  14527576 gtggttcaccggtgagggacttaattgatccctcaccctagaatccacct 14527625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 21837426 - 21837389
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  21837426 gtgagggacttagttggaccctcaccctagaatccacc 21837389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 6056999 - 6057047
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| |||||||||||| | | |||||||||||||||| ||||    
T  6056999 gtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 25725809 - 25725849
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctaga 97  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  25725809 tggtccaccggtgagggacttaattgctccctcaccctaga 25725849  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 53777870 - 53777830
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcacccta 95  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  53777870 cgtggtccaccggtgagagacttaattggaccctcatccta 53777830  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 13416283 - 13416383
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaattggaccctcaccctagaattcac 103  Q
    |||||||| ||||| |||| |||||| ||||| |||||||||||       ||||||||||| | ||||||| |||||||||||||| |||||||| |||    
T  13416283 ttttaatttgaatatatcttaaccatctattttatctaacggtgtttttctcgtggtccaccggcgagggacctaattggaccctcatcctagaatccac 13416382  T
Q  104 c 104  Q
    |    
T  13416383 c 13416383  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 26240872 - 26240921
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    ||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  26240872 tggtccaccggtgagggacttaattgaaccctcaccctagaatccaccta 26240921  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 31109284 - 31109239
Alignment:
Q  59 gtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  31109284 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 31116687 - 31116732
Alignment:
Q  59 gtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  31116687 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 5491335 - 5491379
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaat 99  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||    
T  5491335 cgtggtccaccggtgagggacctaattggaccctcatcctagaat 5491379  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| |||||||||||||||| |||||||||||||||| ||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 16450465 - 16450507
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaa 98  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||    
T  16450465 gtggtacaccagtgagggatttaattgaaccctcaccctagaa 16450507  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  62 caccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||| |||||||||||||||| |||||||||||||||| ||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 16460041 - 16460083
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaa 98  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||    
T  16460041 gtggtacaccagtgagggatttaattgaaccctcaccctagaa 16460083  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 26240161 - 26240112
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcaccta 106  Q
    |||| |||| ||||||||||||||||  ||||||||||||||| ||||||    
T  26240161 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccta 26240112  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 12449312 - 12449360
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 104  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||    
T  12449312 gtggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 24848427 - 24848475
Alignment:
Q  57 tggtccaccagtgagggacttaattggaccctcaccctagaattcacct 105  Q
    |||| |||| |||||||||||||| | |||||||||||||||| |||||    
T  24848427 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacct 24848475  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 27745593 - 27745553
Alignment:
Q  67 gtgagggacttaattggaccctcaccctagaattcacctat 107  Q
    |||||||||||||||| ||||||||| |||||| |||||||    
T  27745593 gtgagggacttaattgaaccctcaccttagaatccacctat 27745553  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 285227 - 285182
Alignment:
Q  55 cgtggtccaccagtgagggacttaattggaccctcaccctagaatt 100  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||    
T  285227 cgtggtccaccggtaagggacctaattggaccctcaccctagaatt 285182  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 285958 - 286035
Alignment:
Q  4 ttttaattcgaataaatctgaaccatgtatttaatctaacggtgnnnnnnncgtggtccaccagtgagggacttaatt 81  Q
    |||||||| |||||||||| |||||| ||||| |||||||||||       ||||||||||| || |||||| |||||    
T  285958 ttttaatttgaataaatcttaaccatctattttatctaacggtgtttttctcgtggtccaccggtaagggacctaatt 286035  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 6512 - 6470
Alignment:
Q  56 gtggtccaccagtgagggacttaattggaccctcaccctagaa 98  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  6512 gtggtccatcggtgagggacttaattgaaccctcaccctagaa 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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