View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6860_low_9 (Length: 563)
Name: NF6860_low_9
Description: NF6860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6860_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 327 - 553
Target Start/End: Original strand, 17455334 - 17455560
Alignment:
| Q |
327 |
tatttctctaaacatgtcgagttgttgcaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcttattatggattttgcagcat |
426 |
Q |
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| T |
17455334 |
tattgctctaaacatgtcaagttgttgcaatttcaattttcataatttacaactattaaatgttacttctttgatgtgcttattatggattttacagcat |
17455433 |
T |
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| Q |
427 |
tttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatttgg |
526 |
Q |
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| T |
17455434 |
tttccgaagaatgtaattaaagatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatttgg |
17455533 |
T |
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| Q |
527 |
tttttcacaattatgaaatgatgtcca |
553 |
Q |
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| T |
17455534 |
tttttcacaattatgaaatgatgtcca |
17455560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17455008 - 17455256
Alignment:
| Q |
1 |
tgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttaatttttcatttctatatgtacttatgcatgcattaccaaa |
100 |
Q |
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| T |
17455008 |
tgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttattttttcatttctatatgtacttttgcatgcattaccaaa |
17455107 |
T |
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| Q |
101 |
tgannnnnnnnnnn-aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatcca |
199 |
Q |
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| T |
17455108 |
tgatttattttttttaggggacattggaagcagctctgcaggttcaaaccttgaagacgatgaaattgatgctgaaatgtacattcaaccgggaaatcca |
17455207 |
T |
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| Q |
200 |
cacttcattgcaaaacatagtctttatagacccaatgaattggtataat |
248 |
Q |
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| T |
17455208 |
cacttcattgcaaaacatagtctttatagacccaatgaattggtataat |
17455256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 17393749 - 17393620
Alignment:
| Q |
115 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
214 |
Q |
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| T |
17393749 |
agggaacattgggagcagctctgcacgatcaaaacttgaagatgacgaaattgatgctgaaatatatattcaaccgggaaatcctcactttattgcaaaa |
17393650 |
T |
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| Q |
215 |
catagtctttatagacccaatgaattggta |
244 |
Q |
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| T |
17393649 |
tatattcattccagacctaatgaattggta |
17393620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 17461363 - 17461459
Alignment:
| Q |
121 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaacat |
217 |
Q |
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| T |
17461363 |
cattggaagtagctctgcagctccaaatcttgaagatgatgaaattgatgctgaaatgtatattcagccaggaaatccatacttctatgcaaaacat |
17461459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 551
Target Start/End: Complemental strand, 17393341 - 17393218
Alignment:
| Q |
428 |
ttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtatgattctaattcgtagatttggt |
527 |
Q |
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| T |
17393341 |
ttccaaagaatgttatcaaggatttctgcctctgcttcacaaaacatgtcacccttgaatgttgccactgtaaggtataattctaatcattagcttttat |
17393242 |
T |
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| Q |
528 |
ttttcacaattatgaaatgatgtc |
551 |
Q |
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| T |
17393241 |
ttttcacatttatgaactgatgtc |
17393218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 505
Target Start/End: Original strand, 17461572 - 17461661
Alignment:
| Q |
416 |
ttttgcagcattttccgaagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
505 |
Q |
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| T |
17461572 |
ttttgcagaatatttcgaagaatgtcatcaaggatttctgcctttgctttacaaagcatatcaccattgtatgttgccactgcaaggtat |
17461661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 17393435 - 17393368
Alignment:
| Q |
346 |
agttgttgcaatttcagttttcataatttacaactattaaatgttacttctttgatgtgcttattatg |
413 |
Q |
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| T |
17393435 |
agttgttgcaattttagttttcttaacttacgatcatttcatgttacttctttgatgtacttattatg |
17393368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 40235230 - 40235135
Alignment:
| Q |
121 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaaca |
216 |
Q |
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| T |
40235230 |
cattggaagcagctctgcagctccaaaacatgaagatgatgaaattgatgttgaaatgtatattcagccaggaaatccttacttctatgcaaaaca |
40235135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 40234861 - 40234789
Alignment:
| Q |
433 |
aagaatgtaattaaggatttctgtgtttgcttcacaaaatatgtcaaccttgtatgttgccactgcaaggtat |
505 |
Q |
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| T |
40234861 |
aagaatgtcgttaaggatttctgcctttgctttacaaagcatatcagccttgtatgttgccactgcaaggtat |
40234789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40235365 - 40235321
Alignment:
| Q |
1 |
tgtagaacctgcaaagcatgtaag-ttttgacatcataccgaaga |
44 |
Q |
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| T |
40235365 |
tgtagaacctgcaaagcatgtatgtttttgacatcatactgaaga |
40235321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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