View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6861_high_3 (Length: 418)

Name: NF6861_high_3
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6861_high_3
NF6861_high_3
[»] chr3 (20 HSPs)
chr3 (1-415)||(12746233-12746640)
chr3 (1-75)||(12741280-12741354)
chr3 (84-128)||(12740853-12740897)
chr3 (135-214)||(10976762-10976841)
chr3 (228-269)||(28130948-28130989)
chr3 (238-286)||(18870722-18870770)
chr3 (228-279)||(9598445-9598496)
chr3 (135-214)||(17763837-17763916)
chr3 (135-214)||(19065157-19065236)
chr3 (302-359)||(36095843-36095897)
chr3 (228-278)||(10308473-10308523)
chr3 (233-271)||(46226089-46226127)
chr3 (238-271)||(4564625-4564658)
chr3 (134-179)||(30171451-30171496)
chr3 (238-271)||(45431964-45431997)
chr3 (238-279)||(47536484-47536525)
chr3 (238-271)||(48511266-48511299)
chr3 (238-270)||(3755355-3755387)
chr3 (380-408)||(6088093-6088121)
chr3 (135-215)||(50239318-50239398)
[»] chr4 (27 HSPs)
chr4 (133-415)||(281502-281783)
chr4 (128-359)||(39974409-39974636)
chr4 (127-359)||(49953325-49953559)
chr4 (135-215)||(13228360-13228440)
chr4 (301-359)||(13228427-13228485)
chr4 (221-286)||(21623416-21623481)
chr4 (228-284)||(11286780-11286836)
chr4 (135-199)||(24183774-24183838)
chr4 (239-273)||(3346284-3346318)
chr4 (233-271)||(13276140-13276178)
chr4 (233-279)||(42344622-42344668)
chr4 (369-415)||(49953264-49953310)
chr4 (238-279)||(836239-836280)
chr4 (238-271)||(2649745-2649778)
chr4 (238-279)||(16304102-16304143)
chr4 (238-271)||(20799406-20799439)
chr4 (238-279)||(23160056-23160097)
chr4 (238-271)||(25783461-25783494)
chr4 (222-271)||(26008061-26008110)
chr4 (216-285)||(33413328-33413397)
chr4 (238-279)||(56551596-56551637)
chr4 (238-286)||(7230296-7230344)
chr4 (238-270)||(16995801-16995833)
chr4 (238-270)||(23775534-23775566)
chr4 (244-276)||(36203258-36203290)
chr4 (238-270)||(50362152-50362184)
chr4 (238-286)||(56204963-56205010)
[»] chr8 (15 HSPs)
chr8 (127-359)||(21589128-21589357)
chr8 (219-288)||(42208464-42208533)
chr8 (214-270)||(31888018-31888074)
chr8 (137-215)||(10901665-10901744)
chr8 (228-304)||(8148406-8148482)
chr8 (135-215)||(40114450-40114530)
chr8 (310-356)||(10901623-10901669)
chr8 (238-272)||(11709002-11709036)
chr8 (238-279)||(7553695-7553736)
chr8 (221-269)||(36122521-36122570)
chr8 (238-270)||(8881291-8881323)
chr8 (238-286)||(13357438-13357486)
chr8 (238-286)||(17704029-17704077)
chr8 (238-270)||(29908027-29908059)
chr8 (135-215)||(41529036-41529116)
[»] chr5 (10 HSPs)
chr5 (128-356)||(33014172-33014399)
chr5 (148-214)||(42312391-42312457)
chr5 (128-216)||(42313296-42313384)
chr5 (228-279)||(1082223-1082274)
chr5 (238-279)||(16701585-16701626)
chr5 (229-285)||(3052286-3052342)
chr5 (244-286)||(18557876-18557918)
chr5 (228-273)||(19759935-19759980)
chr5 (370-415)||(42312292-42312337)
chr5 (238-290)||(27545150-27545202)
[»] chr2 (25 HSPs)
chr2 (301-358)||(3395747-3395804)
chr2 (144-217)||(14868505-14868578)
chr2 (213-286)||(30045444-30045517)
chr2 (213-286)||(30050607-30050680)
chr2 (213-286)||(30141651-30141724)
chr2 (227-279)||(4137996-4138048)
chr2 (301-359)||(5789168-5789226)
chr2 (135-217)||(45658155-45658237)
chr2 (126-215)||(3395791-3395879)
chr2 (228-271)||(29544633-29544676)
chr2 (222-269)||(37413193-37413240)
chr2 (233-279)||(961114-961160)
chr2 (238-271)||(20565087-20565120)
chr2 (221-286)||(30089048-30089113)
chr2 (221-286)||(30125652-30125717)
chr2 (228-277)||(31397795-31397844)
chr2 (238-271)||(31815899-31815932)
chr2 (183-215)||(10999562-10999594)
chr2 (228-268)||(11560504-11560544)
chr2 (219-271)||(12124542-12124594)
chr2 (221-273)||(21558816-21558868)
chr2 (221-269)||(24592860-24592908)
chr2 (221-269)||(26999109-26999157)
chr2 (238-286)||(35820298-35820346)
chr2 (144-213)||(45040761-45040832)
[»] chr6 (7 HSPs)
chr6 (228-279)||(8637441-8637492)
chr6 (135-215)||(34516891-34516971)
chr6 (244-279)||(3808122-3808157)
chr6 (221-279)||(34701146-34701204)
chr6 (238-279)||(31971545-31971586)
chr6 (219-271)||(8569706-8569758)
chr6 (238-286)||(16390445-16390493)
[»] scaffold0159 (1 HSPs)
scaffold0159 (301-359)||(33541-33599)
[»] chr7 (6 HSPs)
chr7 (221-279)||(46185177-46185235)
chr7 (238-279)||(3584220-3584261)
chr7 (227-268)||(34773236-34773277)
chr7 (228-277)||(49063764-49063813)
chr7 (238-274)||(8615039-8615075)
chr7 (221-273)||(34891783-34891835)
[»] scaffold0284 (1 HSPs)
scaffold0284 (135-215)||(2999-3079)
[»] scaffold0114 (1 HSPs)
scaffold0114 (135-215)||(34480-34560)
[»] chr1 (11 HSPs)
chr1 (228-279)||(33020047-33020098)
chr1 (213-271)||(3509953-3510011)
chr1 (244-290)||(6000136-6000182)
chr1 (301-359)||(43387392-43387450)
chr1 (221-279)||(45190273-45190331)
chr1 (238-279)||(33153884-33153925)
chr1 (238-271)||(41973271-41973304)
chr1 (238-270)||(2889939-2889971)
chr1 (238-286)||(34521187-34521235)
chr1 (243-271)||(36679611-36679639)
chr1 (243-271)||(45003421-45003449)
[»] scaffold0334 (1 HSPs)
scaffold0334 (222-279)||(5182-5239)
[»] scaffold0025 (1 HSPs)
scaffold0025 (228-277)||(64224-64273)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 12746640 - 12746233
Alignment:
Q  1 agagattctgcttgatcgtagaatgtaaataggttagagtaccccttgtatttaattaataattaaattgcttatnnnnnnnntatacttacacaacaa- 99  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||     
T  12746640 agagattctccttggtggtagaatgtaaataggttagagtaccccttgtatttaattaataattaaattgcttataaaaaaa-tatacttacacaacaaa 12746542  T
Q  100 gtgagtttgaaccattaaagga-tttcaaactaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgt 198  Q
    |||||||||||||||||||| | |||||||||| |||||||||| ||| |||| | ||| ||||||||||||| ||||||||||||||| ||||||||||    
T  12746541 gtgagtttgaaccattaaagaaatttcaaactagtttggacacccgtgtcaagcatgggctagaatttcatcatatttaatggagagaatattgtgatgt 12746442  T
Q  199 atcaagtgtcagttaaagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaa 298  Q
    || ||||||||||||||||||||||||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  12746441 attaagtgtcagttaaagttcccgtgaacttagctcaagtggtatggacaatgcataatatatgcaaggtccgagattcaatccccggacacaacaaaaa 12746342  T
Q  299 gaaagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtgnnnnnnnnnctcatataccaaaaccttaaaattttggat 398  Q
    |||||||||||        ||||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  12746341 gaaagtgtcat-------acatcattcgataaaatattggagatcgaagaacaaataagtg-aaaaaaaactcatataccaaaaccttaaaattttggat 12746250  T
Q  399 gaagatgtgacatcatt 415  Q
    ||||||| |||||||||    
T  12746249 gaagatgcgacatcatt 12746233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12741354 - 12741280
Alignment:
Q  1 agagattctgcttgatcgtagaatgtaaataggttagagtaccccttgtatttaattaataattaaattgcttat 75  Q
    |||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12741354 agagattctgcttggtggcagaatgtaaataggttagagtaccccttctatttaattaataattaaattgcttat 12741280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 12740897 - 12740853
Alignment:
Q  84 tatacttacacaacaagtgagtttgaaccattaaaggatttcaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12740897 tatacttacacaacaagtgagtttgaaccattaaaggatttcaaa 12740853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 10976841 - 10976762
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaa 214  Q
    ||||||||  ||||||||||||| ||||||||| ||| |||| | |||||||| |||||||||| |||||| | ||||||    
T  10976841 tggacacccatgccaagtacgggctagaatttcgtcatatttgagggagagaatattgtgatgtttcaagtattagttaa 10976762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 28130989 - 28130948
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtc 269  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  28130989 ttagttcaaatggtaaggacaatgcataatatatgcaaggtc 28130948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 18870770 - 18870722
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||||||||| ||||||||||||||||||  ||||||| ||||||    
T  18870770 tggtagggacaatgcataatatatgcaaggtccatgattcaaacctcgg 18870722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 9598445 - 9598496
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||||||  |||| ||||||||| |||| ||||||||||||||||||||||    
T  9598445 ttagttcagttggttgggacaatgtataaaatatgcaaggtccgagattcaa 9598496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 17763837 - 17763916
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaa 214  Q
    |||||||| |||||||| ||||| ||||||||| ||| |||| | | | ||||  |||||| ||||||||||||||||||    
T  17763837 tggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa 17763916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 19065157 - 19065236
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaa 214  Q
    |||||||| |||||||| ||||| ||||||||| ||| |||| | | | ||||  |||||| ||||||||||||||||||    
T  19065157 tggacacccgtgccaagcacgggctagaatttcgtcatatttgaggcaaagaatgttgtgacgtatcaagtgtcagttaa 19065236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 36095843 - 36095897
Alignment:
Q  302 agtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtg 359  Q
    ||||||||||||||| |||   ||||||||||||||||| ||||| ||||||||||||    
T  36095843 agtgtcatttaaatcgcat---tggataaaatattggaggtcgaaaaacaaataagtg 36095897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 10308473 - 10308523
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattca 278  Q
    |||| |||| |||||||||||||| |||||||||||| ||| |||||||||    
T  10308473 ttagctcaattggtagggacaatgcataatatatgcacggttcgagattca 10308523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 46226127 - 46226089
Alignment:
Q  233 tcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  46226127 tcaattggtagggacaatgcataatatatgcaaggtccg 46226089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 4564625 - 4564658
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  4564625 tggtagggacaatgcataatatatgcaaggtccg 4564658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 30171496 - 30171451
Alignment:
Q  134 ttggacacctgtgccaagtacgggttagaatttcatcaaatttaat 179  Q
    ||||| ||| ||||||||||||||||||| |||| |||||||||||    
T  30171496 ttggaaacccgtgccaagtacgggttagactttcgtcaaatttaat 30171451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 45431964 - 45431997
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  45431964 tggtagggacaatgcataatatatgcaaggtccg 45431997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 47536525 - 47536484
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  47536525 tggtagggacaatgcataaaatatgcaaggtccgaggttcaa 47536484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 48511266 - 48511299
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  48511266 tggtagggacaatgcataatatatgcaaggtccg 48511299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 3755355 - 3755387
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  3755355 tggtagggacaatgcataatatatgcaaggtcc 3755387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 6088121 - 6088093
Alignment:
Q  380 aaaccttaaaattttggatgaagatgtga 408  Q
    |||||||||||||||||||||||||||||    
T  6088121 aaaccttaaaattttggatgaagatgtga 6088093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 50239318 - 50239398
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| |||||||| ||||| ||||||||| |||   || | ||||| || ||| ||||||||| |||||||||||||    
T  50239318 tggacacccgtgccaagcacgggctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaa 50239398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 133 - 415
Target Start/End: Original strand, 281502 - 281783
Alignment:
Q  133 tttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagttcccgtgaatttagt 232  Q
    |||||||||| ||| |||| ||||| ||||||||| ||| ||||||||||||| | ||||||||||||||||||| ||||||||||| | |||| ||||     
T  281502 tttggacacccgtgtcaagcacgggctagaatttcgtcatatttaatggagaggatattgtgatgtatcaagtgttagttaaagttctcttgaacttagc 281601  T
Q  233 tcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaagaaagtgtcatttaaatctcatcattggataaaa 332  Q
     ||  ||||| |||||||| |||||||||| |||||||| | ||||| ||||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  281602 gcagttggtatggacaatgcataatatatgaaaggtccggggttcaaacctcggacaccataaaataaaagtgtcatttaaatctcatcattggataaaa 281701  T
Q  333 tattggagatcgaagaacaaataagtgnnnnnnnnnctcatataccaaaaccttaaaattttggatgaagatgtgacatcatt 415  Q
    || ||||| ||||||||||||||||||         ||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  281702 tactggaggtcgaagaacaaataagtg-aaaaaaaactcatatactaaagccttaaaattttggatgaagatgcgacatcatt 281783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 128 - 359
Target Start/End: Original strand, 39974409 - 39974636
Alignment:
Q  128 actaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagttcccgtgaat 227  Q
    |||| |||| ||||| |||||||| ||||| |||||||||  || || |||||||||||| ||||||||||||||||||||| ||||| |||||||| |     
T  39974409 actagtttgaacacccgtgccaagcacgggctagaatttcggcatatctaatggagagaatattgtgatgtatcaagtgtcaattaaaattcccgtg-ac 39974507  T
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaagaaagtgtcatttaaatctcatcattgga 327  Q
    ||||||||| ||||| |||||||| |||||||||| |||||| | | ||||| ||||||||||  |||||| | |||||||||||||||   ||||||||    
T  39974508 ttagttcaactggtatggacaatgcataatatatggaaggtctggggttcaaacctcggacaccacaaaaaaatagtgtcatttaaatc---tcattgga 39974604  T
Q  328 taaaatattggagatcgaagaacaaataagtg 359  Q
    ||||||||||||| ||||||||||||||||||    
T  39974605 taaaatattggaggtcgaagaacaaataagtg 39974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 127 - 359
Target Start/End: Complemental strand, 49953559 - 49953325
Alignment:
Q  127 aactaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagttcccgtgaa 226  Q
    ||||| |||||||||| |||| ||| | ||||||||||||| ||| |||||||||| |||| ||||||||||||||||| | |||||||||||  || ||    
T  49953559 aactagtttggacacccgtgctaagcatgggttagaatttcgtcatatttaatggaaagaatattgtgatgtatcaagtattagttaaagttcttgtaaa 49953460  T
Q  227 tttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaa-gaaag-tgtcatttaaatctcatcatt 324  Q
     |||  |||| || || |||||||| ||||||||||||||||||| | ||||| | |||||||||  ||||| ||||| |||||||||||||||||||||    
T  49953459 cttaactcaactgatatggacaatgcataatatatgcaaggtccggggttcaaacttcggacacaaaaaaaaagaaaggtgtcatttaaatctcatcatt 49953360  T
Q  325 ggataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||||||| ||| ||||||||||||||||||    
T  49953359 ggataaaatattagaggtcgaagaacaaataagtg 49953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 13228360 - 13228440
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| |||||||| ||||| ||||||||| |||  || ||||||||||| ||||||||||||||||||||| |||||    
T  13228360 tggacacccgtgccaagcacgggctagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaa 13228440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 13228427 - 13228485
Alignment:
Q  301 aagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||| |||||| ||| |||||||||| ||||||||| | ||||||||||||||||    
T  13228427 aagtgtcacttaaatatcaacattggataagatattggaggttgaagaacaaataagtg 13228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 21623481 - 21623416
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||| ||||||||  |||||||||||||| ||||||||||||||||| ||| || || ||||||    
T  21623481 cgtgaacttagttcagttggtagggacaatgcataatatatgcaaggtctgaggtttaaacctcgg 21623416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 11286836 - 11286780
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctc 284  Q
    ||||||||  |||||| ||||||| ||||||||||||||||| ||||||||| ||||    
T  11286836 ttagttcagttggtagagacaatgcataatatatgcaaggtctgagattcaaacctc 11286780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 24183838 - 24183774
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgta 199  Q
    |||||||| |||||||| ||||| ||||||| ||||||| |||| ||||| || |||||||||||    
T  24183838 tggacacccgtgccaagcacgggctagaattccatcaaacttaaaggagataatattgtgatgta 24183774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 3346318 - 3346284
Alignment:
Q  239 ggtagggacaatggataatatatgcaaggtccgag 273  Q
    ||||||||||||| |||||||||||||||||||||    
T  3346318 ggtagggacaatgcataatatatgcaaggtccgag 3346284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 13276140 - 13276178
Alignment:
Q  233 tcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  13276140 tcaattggtagggacaatgcataatatatgcaaggtccg 13276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 42344668 - 42344622
Alignment:
Q  233 tcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  42344668 tcaattggtaggaacaatgtataatatatgcaaggtccgaggttcaa 42344622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 49953310 - 49953264
Alignment:
Q  369 ctcatataccaaaaccttaaaattttggatgaagatgtgacatcatt 415  Q
    ||||||||| ||| ||||||||||||||||||||| | |||||||||    
T  49953310 ctcatatactaaagccttaaaattttggatgaagacgcgacatcatt 49953264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 836280 - 836239
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| | ||||||||||||||||||| |||||    
T  836280 tggtagggacaatgcaaaatatatgcaaggtccgaggttcaa 836239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 2649778 - 2649745
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  2649778 tggtagggacaatgcataatatatgcaaggtccg 2649745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 16304143 - 16304102
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||| |||||||| ||||||||||||||||||| |||||||    
T  16304143 tggtatggacaatgcataatatatgcaaggtccgggattcaa 16304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 20799439 - 20799406
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  20799439 tggtagggacaatgcataatatatgcaaggtccg 20799406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 23160056 - 23160097
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| |||||||||| |||||||||| |||||    
T  23160056 tggtagggacaatgcataatatatgtaaggtccgaggttcaa 23160097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 25783494 - 25783461
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  25783494 tggtagggacaatgcataatatatgcaaggtccg 25783461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 26008110 - 26008061
Alignment:
Q  222 gtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    |||| |||||||||| |||||  ||||||| |||||||||||||||||||    
T  26008110 gtgagtttagttcaattggtaaagacaatgcataatatatgcaaggtccg 26008061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 33413397 - 33413328
Alignment:
Q  216 gttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcg 285  Q
    |||| ||||||||||| |||  || || |||||||| ||||||||| ||| ||||||||||||| |||||    
T  33413397 gttctcgtgaatttagctcagttgataaggacaatgcataatatattcaatgtccgagattcaaacctcg 33413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 56551637 - 56551596
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||| |||||||| ||||||||||||||||||||| |||||    
T  56551637 tggtaaggacaatgcataatatatgcaaggtccgaggttcaa 56551596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 7230296 - 7230344
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    ||||| |||||||| ||||||||||||||||||| | ||||| ||||||    
T  7230296 tggtaaggacaatgcataatatatgcaaggtccggggttcaaacctcgg 7230344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 16995801 - 16995833
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  16995801 tggtagggacaatgcataatatatgcaaggtcc 16995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 23775534 - 23775566
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  23775534 tggtagggacaatgcataatatatgcaaggtcc 23775566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 36203258 - 36203290
Alignment:
Q  244 ggacaatggataatatatgcaaggtccgagatt 276  Q
    |||||||| ||||||||||||||||||||||||    
T  36203258 ggacaatgcataatatatgcaaggtccgagatt 36203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 50362184 - 50362152
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  50362184 tggtagggacaatgcataatatatgcaaggtcc 50362152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 56204963 - 56205010
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    ||||| |||||||| ||||||||||||||||||| ||||||| ||||||    
T  56204963 tggtaaggacaatgcataatatatgcaaggtccg-gattcaaacctcgg 56205010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 127 - 359
Target Start/End: Complemental strand, 21589357 - 21589128
Alignment:
Q  127 aactaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagttcccgtgaa 226  Q
    ||||| |||||||||| |||||||| ||||| |||||||||  || || |||||||||||| ||||||| ||||||||||||||||||| ||| ||| ||    
T  21589357 aactagtttggacacccgtgccaagcacgggctagaatttcggcatatctaatggagagaatattgtgacgtatcaagtgtcagttaaaattctcgtaaa 21589258  T
Q  227 tttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaagaaagtgtcatttaaatctcatcattgg 326  Q
     ||||||||  ||||| |||||||| |||||||||| |||||||| ||||||| ||| ||||||  |||||| | ||||| |||||||||   |||||||    
T  21589257 cttagttcagctggtatggacaatgcataatatatggaaggtccgggattcaaaccttggacaccacaaaaaaatagtgtaatttaaatc---tcattgg 21589161  T
Q  327 ataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||||||||| ||||||||||||||||||    
T  21589160 ataaaatattggaggtcgaagaacaaataagtg 21589128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 42208533 - 42208464
Alignment:
Q  219 cccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggac 288  Q
    ||||||||||||| |||  ||||| |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  42208533 cccgtgaatttagctcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaacctcggac 42208464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 31888018 - 31888074
Alignment:
Q  214 aagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtcc 270  Q
    ||||||||||||| |||| |||  ||||| |||||||||||||||||||||||||||    
T  31888018 aagttcccgtgaacttagctcagttggtaaggacaatggataatatatgcaaggtcc 31888074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 10901744 - 10901665
Alignment:
Q  137 gacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtg-tcagttaaa 215  Q
    ||||||||||||||| ||||| ||||||||| |||   | ||||||||||| ||||| |||||||||||| |||||||||    
T  10901744 gacacctgtgccaagcacgggctagaatttcgtcatcctcaatggagagaatattgtaatgtatcaagtgttcagttaaa 10901665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 8148482 - 8148406
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaagaaagt 304  Q
    |||| |||| ||||| |||||||| |||||||||||||||||  |||||| | ||||||||||  |||||| |||||    
T  8148482 ttagctcaattggtatggacaatgtataatatatgcaaggtctaagattcgaacctcggacaccacaaaaaaaaagt 8148406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 40114530 - 40114450
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| |||||||| ||||||||||||||| ||| | || | ||||| || ||| ||||||||  |||||||||||||    
T  40114530 tggacacccgtgccaagcacgggttagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaa 40114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 10901669 - 10901623
Alignment:
Q  310 ttaaatctcatcattggataaaatattggagatcgaagaacaaataa 356  Q
    |||||||||| |||||||||||||||||||| | |||||||| ||||    
T  10901669 ttaaatctcaacattggataaaatattggaggttgaagaacatataa 10901623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 11709002 - 11709036
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccga 272  Q
    |||||||||||||| ||||||||||||||||||||    
T  11709002 tggtagggacaatgcataatatatgcaaggtccga 11709036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 7553695 - 7553736
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| |||||||||||||||||| || |||||    
T  7553695 tggtagggacaatgcataatatatgcaaggtccaaggttcaa 7553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 36122521 - 36122570
Alignment:
Q  221 cgtgaatttagttcaaatggtagggac-aatggataatatatgcaaggtc 269  Q
    |||||| ||||||||| |||||||||| |||| |||||||||||||||||    
T  36122521 cgtgaacttagttcaattggtagggacaaatgcataatatatgcaaggtc 36122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 8881291 - 8881323
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  8881291 tggtagggacaatgcataatatatgcaaggtcc 8881323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 13357486 - 13357438
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    ||||| |||||||| |||||||||||||||| |||| ||||| ||||||    
T  13357486 tggtatggacaatgcataatatatgcaaggtacgaggttcaaacctcgg 13357438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 17704029 - 17704077
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    ||||| |||||||| ||||||||||||||||| | ||||||| ||||||    
T  17704029 tggtaaggacaatgcataatatatgcaaggtctgtgattcaaacctcgg 17704077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 29908027 - 29908059
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  29908027 tggtagggacaatgcataatatatgcaaggtcc 29908059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 41529116 - 41529036
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| |||||||| ||||| ||||||||| ||| | |  | ||||| || ||| ||||||||| |||||||||||||    
T  41529116 tggacacccgtgccaagcacgggctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaa 41529036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 128 - 356
Target Start/End: Complemental strand, 33014399 - 33014172
Alignment:
Q  128 actaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagttcccgtgaat 227  Q
    |||| |||||||||| |||| ||| ||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||||  |||||||||| | ||||     
T  33014399 actagtttggacacccgtgctaagcacgggctagaatttcgtcatatttaatggagaggatattgtgatgtatcaagtgttggttaaagttctcttgaac 33014300  T
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacacagcaaaaagaaagtgtcatttaaatctcatcattgga 327  Q
    |||| |||  ||||  |||||||| |||||||||| |||||| | | ||||| |||||||| |  |||||| ||||||||| ||||||||||||||||||    
T  33014299 ttagctcagttggtgtggacaatgcataatatatgaaaggtctggggttcaaacctcggactccacaaaaa-aaagtgtcacttaaatctcatcattgga 33014201  T
Q  328 taaaatattggagatcgaagaacaaataa 356  Q
    ||||||||||||| |||||||||||||||    
T  33014200 taaaatattggaggtcgaagaacaaataa 33014172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 42312457 - 42312391
Alignment:
Q  148 caagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaa 214  Q
    |||||||||||||||||||| ||| ||||  |||||| || ||||||||||||||||||||||||||    
T  42312457 caagtacgggttagaatttcgtcatatttggtggagaaaatattgtgatgtatcaagtgtcagttaa 42312391  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 42313296 - 42313384
Alignment:
Q  128 actaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaag 216  Q
    |||||| |||||| | |||| ||||||| | || |||||| ||| | ||  ||||||||| ||||||||||||||||||||||||||||    
T  42313296 actaatatggacatccgtgctaagtacgagctataatttcctcatacttggtggagagaatattgtgatgtatcaagtgtcagttaaag 42313384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 1082274 - 1082223
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||||||  |||||||||||||| ||||||||| |||||||||||||||||    
T  1082274 ttagttcagttggtagggacaatgtataatatatacaaggtccgagattcaa 1082223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 16701626 - 16701585
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  16701626 tggtagggacaatgaataatatatgcaaggtccgggattcaa 16701585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 3052286 - 3052342
Alignment:
Q  229 tagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcg 285  Q
    |||||||  |||||||||||||| |||||||||||||||| |||| ||||| |||||    
T  3052286 tagttcagctggtagggacaatgtataatatatgcaaggttcgaggttcaaacctcg 3052342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 18557876 - 18557918
Alignment:
Q  244 ggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||    
T  18557876 ggacaatgcataatatgtgcaaggtccgagattcaaacctcgg 18557918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 19759935 - 19759980
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgag 273  Q
    |||| |||| ||||||| |||||| |||||||||||||||||||||    
T  19759935 ttagctcaattggtaggtacaatgcataatatatgcaaggtccgag 19759980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 42312337 - 42312292
Alignment:
Q  370 tcatataccaaaaccttaaaattttggatgaagatgtgacatcatt 415  Q
    ||||||||  || ||||||||||||||||||||||| |||||||||    
T  42312337 tcatatacttaagccttaaaattttggatgaagatgcgacatcatt 42312292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 27545202 - 27545150
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcggacac 290  Q
    |||||||||||||| |||||||||||||||  |||| |||||  |||||||||    
T  27545202 tggtagggacaatgcataatatatgcaagggtcgaggttcaaatctcggacac 27545150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 3395804 - 3395747
Alignment:
Q  301 aagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagt 358  Q
    |||||||| |||||| ||| |||||||||||||||||||| | |||||||||||||||    
T  3395804 aagtgtcagttaaatatcaacattggataaaatattggaggttgaagaacaaataagt 3395747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 14868505 - 14868578
Alignment:
Q  144 gtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagt 217  Q
    |||||||| ||||||||||||| ||||||| |||| ||||| || ||||||||||| |||  ||||||||||||    
T  14868505 gtgccaagcacgggttagaattccatcaaacttaaaggagataatattgtgatgtagcaaaagtcagttaaagt 14868578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 30045444 - 30045517
Alignment:
Q  213 aaagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||  ||||| |||| |||| |||||||||||||| ||||||||| |||||| |||||||||| ||||||    
T  30045444 aaagttctggtgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcgg 30045517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 30050607 - 30050680
Alignment:
Q  213 aaagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||  ||||| |||| |||| |||||||||||||| ||||||||| |||||| |||||||||| ||||||    
T  30050607 aaagttctggtgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcgg 30050680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 30141651 - 30141724
Alignment:
Q  213 aaagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||  ||||| |||| |||| |||||||||||||| ||||||||| |||||| |||||||||| ||||||    
T  30141651 aaagttctggtgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcgg 30141724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 4137996 - 4138048
Alignment:
Q  227 tttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||    
T  4137996 tttagctcaattggtaaggacaatgtataatatatgcaaggtccgagattcaa 4138048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 5789226 - 5789168
Alignment:
Q  301 aagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||    
T  5789226 aagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtg 5789168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 45658155 - 45658237
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaagt 217  Q
    |||| ||| |||| ||| ||||| ||||||||||||||| |||| ||||| || ||||||||||| |||  ||||||||||||    
T  45658155 tggaaacccgtgctaagcacgggctagaatttcatcaaacttaaaggagataatattgtgatgtagcaaaagtcagttaaagt 45658237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 3395879 - 3395791
Alignment:
Q  126 aaactaatttggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||| | |||||||| |||||||| ||||| ||||||| | |||  || ||||||||||| | |||||| ||||||||||||||||||    
T  3395879 aaactagtatggacacccgtgccaagcacgggctagaattacgtcattttcaatggagagaata-tgtgatatatcaagtgtcagttaaa 3395791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 29544633 - 29544676
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    |||| |||| |||||||||||||| |||||||||||||||||||    
T  29544633 ttagctcaattggtagggacaatgcataatatatgcaaggtccg 29544676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 37413240 - 37413193
Alignment:
Q  222 gtgaatttagttcaaatggtagggacaatggataatatatgcaaggtc 269  Q
    ||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  37413240 gtgaatttagttcagttggtagggacaatgcataaaatatgcaaggtc 37413193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 961114 - 961160
Alignment:
Q  233 tcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||| |||||||||||||| ||||||||||||||||||  |||||||    
T  961114 tcaattggtagggacaatgcataatatatgcaaggtccatgattcaa 961160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 20565120 - 20565087
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  20565120 tggtagggacaatgcataatatatgcaaggtccg 20565087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 30089048 - 30089113
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||| |||| |||  |||||||||||||| ||||||||| ||||||||| | ||||| ||||||    
T  30089048 cgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcgg 30089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 30125652 - 30125717
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||| |||| |||  |||||||||||||| ||||||||| ||||||||| | ||||| ||||||    
T  30125652 cgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcgg 30125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 31397844 - 31397795
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattc 277  Q
    |||| |||| |||||||||||||| |||| ||||| ||||||||||||||    
T  31397844 ttagctcaattggtagggacaatgcataaaatatgtaaggtccgagattc 31397795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 31815932 - 31815899
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  31815932 tggtagggacaatgcataatatatgcaaggtccg 31815899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 10999594 - 10999562
Alignment:
Q  183 gagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    ||||| |||||||||||||||||||||||||||    
T  10999594 gagaatattgtgatgtatcaagtgtcagttaaa 10999562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 11560504 - 11560544
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggt 268  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  11560504 ttagctcaattggtagggacaatgcataatatatgcaaggt 11560544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 12124542 - 12124594
Alignment:
Q  219 cccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    ||||||| ||||| |||  ||||| |||||||| |||||||||||||||||||    
T  12124542 cccgtgagtttagctcagttggtaaggacaatgcataatatatgcaaggtccg 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 21558868 - 21558816
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgag 273  Q
    |||||| |||| |||  ||||| |||||||| |||||||||||||||||||||    
T  21558868 cgtgaacttagctcagctggtaaggacaatgcataatatatgcaaggtccgag 21558816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 24592908 - 24592860
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtc 269  Q
    |||||| |||| |||  |||||||||||||| |||||||||||||||||    
T  24592908 cgtgaacttagctcagttggtagggacaatgcataatatatgcaaggtc 24592860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 26999109 - 26999157
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtc 269  Q
    |||||| ||||||||  |||||| ||||||| |||||||||||||||||    
T  26999109 cgtgaacttagttcagttggtagagacaatgcataatatatgcaaggtc 26999157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 35820346 - 35820298
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||||||||| |||||| |||||||||||| | ||||| ||||||    
T  35820346 tggtagggacaatgcataatacatgcaaggtccggggttcaaacctcgg 35820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 45040761 - 45040832
Alignment:
Q  144 gtgccaagtacgggttagaatttcatcaaatttaatgga--gagaaaattgtgatgtatcaagtgtcagtta 213  Q
    |||| |||||||||||| |||||| ||| ||||||  ||  |||||| ||||||||||||||||||| ||||    
T  45040761 gtgctaagtacgggttaaaatttcgtcatatttaaaagaaagagaaagttgtgatgtatcaagtgtcggtta 45040832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 8637492 - 8637441
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||| |||||    
T  8637492 ttagttcagttggtagggacaatgcataatatatgcaaggtccgaggttcaa 8637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 34516971 - 34516891
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    ||||||||||||||||| ||||| |||||||   |||||||||| |||||  | ||||||||||| |||  ||||||||||    
T  34516971 tggacacctgtgccaagcacgggctagaattctgtcaaatttaagggagatgatattgtgatgtagcaaaagtcagttaaa 34516891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 3808157 - 3808122
Alignment:
Q  244 ggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||| |||||||||||||||||||||||||||    
T  3808157 ggacaatgcataatatatgcaaggtccgagattcaa 3808122  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 34701146 - 34701204
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||| ||||||||  ||||||| |||||| ||||||||||||||||| ||| |||||    
T  34701146 cgtgaacttagttcagttggtaggaacaatgcataatatatgcaaggtctgaggttcaa 34701204  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 31971545 - 31971586
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||| |||||||| ||||||||||||||||||||| |||||    
T  31971545 tggtaaggacaatgcataatatatgcaaggtccgaggttcaa 31971586  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 8569706 - 8569758
Alignment:
Q  219 cccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    ||||||| ||||  |||| ||||| |||||||| |||||||||||||||||||    
T  8569706 cccgtgagtttaactcaattggtatggacaatgcataatatatgcaaggtccg 8569758  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 16390445 - 16390493
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    |||||||||||||| |||||||||| |||||||| | ||||| ||||||    
T  16390445 tggtagggacaatgcataatatatgtaaggtccggggttcaaacctcgg 16390493  T

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Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 33599 - 33541
Alignment:
Q  301 aagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||| ||||||||||  ||||||||||| ||||||| | ||||||||||||||||    
T  33599 aagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtg 33541  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 46185235 - 46185177
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||||||||| |||| ||||||| |||||| |||| ||||||||||| ||||||||||    
T  46185235 cgtgaatttagctcaattggtaggaacaatgcataaaatatgcaaggttcgagattcaa 46185177  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 3584220 - 3584261
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    ||||| |||||||| |||||||||||||||| ||||||||||    
T  3584220 tggtaaggacaatgcataatatatgcaaggtacgagattcaa 3584261  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 34773236 - 34773277
Alignment:
Q  227 tttagttcaaatggtagggacaatggataatatatgcaaggt 268  Q
    |||||||||  |||||||||||||| ||||||||||||||||    
T  34773236 tttagttcagttggtagggacaatgcataatatatgcaaggt 34773277  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 49063813 - 49063764
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattc 277  Q
    |||| ||| |||||| |||||||| |||||| ||||||||||||||||||    
T  49063813 ttagctcagatggtacggacaatgcataataaatgcaaggtccgagattc 49063764  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 8615039 - 8615075
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgaga 274  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  8615039 tggtaaggacaatgcataatatatgcaaggtccgaga 8615075  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 34891835 - 34891783
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgag 273  Q
    |||||| |||| |||| ||||| |||||||| ||||||||| |||||||||||    
T  34891835 cgtgaacttagctcaattggtatggacaatgtataatatattcaaggtccgag 34891783  T

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Target: scaffold0284 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 3079 - 2999
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| |||||||| ||||| ||||||||| ||||| || | | ||| || ||| ||||||||| |||||||||||||    
T  3079 tggacacccgtgccaagcacgggctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaa 2999  T

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Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 34480 - 34560
Alignment:
Q  135 tggacacctgtgccaagtacgggttagaatttcatcaaatttaatggagagaaaattgtgatgtatcaagtgtcagttaaa 215  Q
    |||||||| ||| |||| ||||| ||||||||| ||| | || ||||||| || ||| ||||||||| |||||||||||||    
T  34480 tggacacccgtgtcaagcacgggctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaa 34560  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 33020098 - 33020047
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||| |||| |||||||||||||| ||||||||||||||||| ||| |||||    
T  33020098 ttagctcaactggtagggacaatgcataatatatgcaaggtctgaggttcaa 33020047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 3510011 - 3509953
Alignment:
Q  213 aaagttcccgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccg 271  Q
    ||||||| |||||| |||| |||  ||||| |||||||| |||||||||||||||||||    
T  3510011 aaagttctcgtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccg 3509953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 6000182 - 6000136
Alignment:
Q  244 ggacaatggataatatatgcaaggtccgagattcaatcctcggacac 290  Q
    |||||||| ||||||||||||||||||||| ||||| || |||||||    
T  6000182 ggacaatgcataatatatgcaaggtccgaggttcaaaccccggacac 6000136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 43387450 - 43387392
Alignment:
Q  301 aagtgtcatttaaatctcatcattggataaaatattggagatcgaagaacaaataagtg 359  Q
    |||||||| |||||| ||| | |||||||||||||||||| | |||||||| |||||||    
T  43387450 aagtgtcaattaaatttcaacgttggataaaatattggaggttgaagaacatataagtg 43387392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 45190331 - 45190273
Alignment:
Q  221 cgtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||| ||||||||  ||||| |||||||| |||||||||||||||| || |||||||    
T  45190331 cgtgaacttagttcagttggtatggacaatgcataatatatgcaaggttcgggattcaa 45190273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 33153925 - 33153884
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||||||||||||| |||||||||| |||||||||| |||||    
T  33153925 tggtagggacaatgcataatatatgtaaggtccgaggttcaa 33153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 41973271 - 41973304
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||| |||||||||||||||||||    
T  41973271 tggtagggacaatgcataatatatgcaaggtccg 41973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 2889971 - 2889939
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtcc 270  Q
    |||||||||||||| ||||||||||||||||||    
T  2889971 tggtagggacaatgcataatatatgcaaggtcc 2889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 34521235 - 34521187
Alignment:
Q  238 tggtagggacaatggataatatatgcaaggtccgagattcaatcctcgg 286  Q
    ||||| |||||||| ||||||||||||||||||| | ||||| ||||||    
T  34521235 tggtatggacaatgcataatatatgcaaggtccggggttcaaacctcgg 34521187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 36679611 - 36679639
Alignment:
Q  243 gggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||||||||||||||||||    
T  36679611 gggacaatggataatatatgcaaggtccg 36679639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 45003421 - 45003449
Alignment:
Q  243 gggacaatggataatatatgcaaggtccg 271  Q
    |||||||||||||||||||||||||||||    
T  45003421 gggacaatggataatatatgcaaggtccg 45003449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 5182 - 5239
Alignment:
Q  222 gtgaatttagttcaaatggtagggacaatggataatatatgcaaggtccgagattcaa 279  Q
    |||| ||||| |||| ||||| |||||||| ||||||||||||||||| ||| |||||    
T  5182 gtgagtttagctcaattggtatggacaatgcataatatatgcaaggtctgaggttcaa 5239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 64224 - 64273
Alignment:
Q  228 ttagttcaaatggtagggacaatggataatatatgcaaggtccgagattc 277  Q
    |||| |||| ||||| |||||||| ||||||||||||||||||| |||||    
T  64224 ttagctcaactggtatggacaatgcataatatatgcaaggtccgggattc 64273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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