View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6861_high_5 (Length: 409)
Name: NF6861_high_5
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6861_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 36080732 - 36081114
Alignment:
| Q |
9 |
gatggaatggaatccttatggtggaaagatgcataagatttcagcatcagaaactccatttcctcataggaaaggaaatttgttcttgattgaatatttg |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36080732 |
gatggaatggaatccttatggtgggaagatgcataagatttcagcatcagaaactccatttcctcataggaaaggaaatttgttcttgattgaatatttg |
36080831 |
T |
|
| Q |
109 |
acatcttgggatgaagatggaattgaggctaaaaatctttacttgaacatggcaaagacattctatgattttatgacaccttgggtttccaactcgccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36080832 |
acatcttgggatgaagatggaattgaggctaaaaatctttacctgaacatggcaaagacattctatgattttatgacaccttgggtttccaattcgccta |
36080931 |
T |
|
| Q |
209 |
gggaggcatttcttaattatagagatcttaatataggtgcaaattatcctagtaatgtaacaaccaaagttgacattgcacgaagttatgggatcaaata |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36080932 |
ggaaggcatttcttaattatagagatcttaatataggtgcaaattatcctagtaatgcaacaaccaaagttgacattgcacgaagttatgggatcaaata |
36081031 |
T |
|
| Q |
309 |
ttttcggggtaactttcatagattagtgcatgttaaatccaaggttgatcctcacaatttctttagatatgagcagagtatac |
391 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36081032 |
ttttcagggtaactttcatagattagtgcatgttaaatccaaggttgatcctcacaatttctttagatatgagcagagtatac |
36081114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 34971051 - 34970960
Alignment:
| Q |
10 |
atggaatggaatccttatggtggaaagatgcataagatttcagcatcagaaactccatttcctcataggaaaggaaatttgttcttgattga |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||| | |||| | |||||||||| || ||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
34971051 |
atggaatggaatccttatggtggaaggatggaagagatattgtcatcagaaacaccgtttccccatagagcagggaatttgttcttgattga |
34970960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 6839517 - 6839614
Alignment:
| Q |
172 |
tatgattttatgacaccttgggtttccaactcgcctagggaggcatttcttaattatagagatcttaatataggtgcaaattatcctagtaatgtaac |
269 |
Q |
| |
|
||||| ||||||||||||| ||||| || || |||||||||||||| || |||||||| ||| | |||| ||||| ||| |||| ||||||||||| |
|
|
| T |
6839517 |
tatgaatttatgacaccttatgtttctaattctcctagggaggcattcctcaattatagggatgctgatattggtgctaatcatccaagtaatgtaac |
6839614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 11918220 - 11918278
Alignment:
| Q |
19 |
aatccttatggtggaaagatgcataagatttcagcatcagaaactccatttcctcatag |
77 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| || |||||||||| || |||||||| |
|
|
| T |
11918220 |
aatccttatggtggaaaaatggatgagatttcaccaacagaaactcctttacctcatag |
11918278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University