View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6861_high_8 (Length: 326)
Name: NF6861_high_8
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6861_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 30345535 - 30345239
Alignment:
| Q |
14 |
ttggtgttctaaagatgtgtgcatatagaggtttcttgttttgatttttcttgtgatttgagttgtgtgttgaagttgaaattgaatgttaaggggaaat |
113 |
Q |
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| T |
30345535 |
ttggtgttctaaagatgtgtgcatatagaggtttcttgttttgatttttcttgtgatttgagttgtgtgttgaagttgaaattgaatgttaaggggaaat |
30345436 |
T |
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| Q |
114 |
ggtgaagactatgtgaagttttggagaggtaggtacacaaacactgaagcaaagtgcgtttgggttggaatctcttatgaaagtgcgtttttaacgcctg |
213 |
Q |
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| T |
30345435 |
ggtgaagactatgtgaagttttggagaggtaggtacacaaacactgaagcaaagtgcgtttgggttggaatctcttatgaaagtgcatttttaacgcctg |
30345336 |
T |
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| Q |
214 |
tttttgagcaaaagtggacattatatgc-ttgagacttatttaacatgcacacaactgttttaggtgtttccctatgcctgcatgtagacttgtaat |
309 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30345335 |
tttttgagcaaaagtggactttatatgctttgagacttatttaacatgcacacaactgttttaggtgtttccctatgcctgcatgtagacttgtaat |
30345239 |
T |
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