View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6861_low_17 (Length: 243)
Name: NF6861_low_17
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6861_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 46343477 - 46343694
Alignment:
| Q |
20 |
atgtaagccatgctttctgtatgaaaaannnnnnnatcagacatttatcatctatctgtatgctttctctttggtttatttctgaattctgacaatccag |
119 |
Q |
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| T |
46343477 |
atgtaagccatgctttctgtatgaaaataaattttatcagacatttatcatctatctgtatgctttctctttggtttatttctgaattctgacaatccag |
46343576 |
T |
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| Q |
120 |
gatttattttattaaatcctggctggacaattgtatttttaattttgctaatgtctattttatatgcacttcaccaaaaggactatgcttacaaatttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46343577 |
gatttattttattaaatcctggctggacaattgtatttttaattttgctaatgtctattttatatgcacttcaccaaaaggactatgcttacaaatttat |
46343676 |
T |
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| Q |
220 |
tgctctatacaactccaa |
237 |
Q |
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|||||||||||| ||||| |
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| T |
46343677 |
tgctctatacaattccaa |
46343694 |
T |
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