View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6861_low_7 (Length: 356)
Name: NF6861_low_7
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6861_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 56045639 - 56045301
Alignment:
| Q |
1 |
aggactaaggtataacttgccatacttgttgtatgcatcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttgac |
100 |
Q |
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| T |
56045639 |
aggactaaggtataacttgccatacttgttgtatgcatcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttgac |
56045540 |
T |
|
| Q |
101 |
gtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacgggtagaattatatagatgaacatgataaatc |
200 |
Q |
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| T |
56045539 |
gtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacgggtagaattatatagatgaacatgataaatc |
56045440 |
T |
|
| Q |
201 |
caaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaatgcaccaattccaag |
300 |
Q |
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| T |
56045439 |
caaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaatgcaccaattccaag |
56045340 |
T |
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| Q |
301 |
tccatggtaacctgatccaatttgttgtgctgtgatatt |
339 |
Q |
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| T |
56045339 |
tccatggtaacctgatccaatttgttgtgctgtgatatt |
56045301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 55707102 - 55706814
Alignment:
| Q |
8 |
aggtataacttgccatacttgttgtatgca---------tcaatgttaagatcatattccttggttaagatctttgtcgtgtcatacttgtgtccacttg |
98 |
Q |
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| T |
55707102 |
aggtataacttgccatacttgttgtatgcaatgcatgcatcaatgttaagaacatattccttggttaagatcttcgtagtgtcaaccttttgtccactgg |
55707003 |
T |
|
| Q |
99 |
acgtgaacaactgattagagaatataggaaacttcctagcatcaaaag-tgttaaacctccagtaacat-acgggtagaattatatagatgaacatgata |
196 |
Q |
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| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||| |||||| | | |||||||||||||||||||| |||| |
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| T |
55707002 |
atgtgaacaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaacttccactaacattatagatagaattatatagatgaacaagata |
55706903 |
T |
|
| Q |
197 |
aatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaa |
285 |
Q |
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|||||||||| |||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| | ||| || ||||||||||| |
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| T |
55706902 |
aatccaacccaaacattaacagtggaagaccacggtgtaacaagagggcttccatgataagctgaaatccaagcgcagtcaagtgtgaa |
55706814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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