View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6861_low_9 (Length: 328)
Name: NF6861_low_9
Description: NF6861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6861_low_9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 12746778 - 12746469
Alignment:
| Q |
20 |
aggaggttgaatgagtttaatttaactttatttggcaaatgatgatgaaggatgttggaagaaaggaagagttttatggcacagaatgttaggtgctcga |
119 |
Q |
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| T |
12746778 |
aggaggttgaatgagtttaatttaactttatttagcaaatggtgatgaaggatgttggaagaaaggaagagttttatggcacaaaatgttaggtgctcga |
12746679 |
T |
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| Q |
120 |
tatggcgaggaaggagggagattgcagtttggtgggaaagagattctgcttgatcgtagaatgtaaataggttagagtaccccttgtatttaattaataa |
219 |
Q |
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| T |
12746678 |
tatggtgaggaaggagggagattgcggtttggtggaaaagagattctccttggtggtagaatgtaaataggttagagtaccccttgtatttaattaataa |
12746579 |
T |
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| Q |
220 |
ttaaattgcttatnnnnnnnntatacttacacaac-aagtgagtttgaaccattaaag-gatttcaaactaatttggacacctgtgccaagtacgggtta |
317 |
Q |
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| T |
12746578 |
ttaaattgcttat-aaaaaaatatacttacacaacaaagtgagtttgaaccattaaagaaatttcaaactagtttggacacccgtgtcaagcatgggcta |
12746480 |
T |
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| Q |
318 |
gaatttcatca |
328 |
Q |
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| T |
12746479 |
gaatttcatca |
12746469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 12741493 - 12741280
Alignment:
| Q |
20 |
aggaggttgaatgagtttaatttaactttatttggcaaatgatgatgaaggatgttggaagaaaggaagagttttatggcacagaatgttaggtgctcga |
119 |
Q |
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| T |
12741493 |
aggaggttgaatgagtttaatttagctttattttgcaaatggtgatgaaggatgttggaagaaaggaagagttttatggcacaaaatgttaggtgctcga |
12741394 |
T |
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| Q |
120 |
tatggcgaggaaggagggagattgcagtttggtgg-gaaagagattctgcttgatcgtagaatgtaaataggttagagtaccccttgtatttaattaata |
218 |
Q |
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| T |
12741393 |
tatggtgaggaaggagggagattgcggtttggtggtgaaagagattctgcttggtggcagaatgtaaataggttagagtaccccttctatttaattaata |
12741294 |
T |
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| Q |
219 |
attaaattgcttat |
232 |
Q |
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| T |
12741293 |
attaaattgcttat |
12741280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 12740897 - 12740853
Alignment:
| Q |
241 |
tatacttacacaacaagtgagtttgaaccattaaaggatttcaaa |
285 |
Q |
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| T |
12740897 |
tatacttacacaacaagtgagtttgaaccattaaaggatttcaaa |
12740853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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