View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6862_high_3 (Length: 333)
Name: NF6862_high_3
Description: NF6862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6862_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 38019338 - 38019656
Alignment:
| Q |
3 |
ggtccaccatatagtatatcactcaaataaagtggaagtactgagatttgttaagtatgccgacaatattggttttggaggaagataaacgatctattgt |
102 |
Q |
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| T |
38019338 |
ggtccaccatatagtatatcactcaaataaagtggaagtactgagatttgttaagtatgccgacaatattggttttggaggaagataaacgatctattgt |
38019437 |
T |
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| Q |
103 |
aagttttcttattacgtgtatctgtttaggcgggtgtgcccaaaagtgatgtgttggacttgtgaccacacaagaactacttctattttacattcgaaat |
202 |
Q |
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| T |
38019438 |
aagttttcttattacatgtatctttttaggcgggtgtgcccaaaagtgatgtgttgggcttgtgaccacacaagaaatacttctattttacattcgaaat |
38019537 |
T |
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| Q |
203 |
tatctcaagttctcgtttatcaaaccggatgcaaataaaatactgccatttatgtgaaggtgaagtacacacacctgaagaggcacacaataaaaattaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38019538 |
tatctcaagttctcgtttatcaaaccggatgcaaataaaatactgccatttatgtcaaggtgaagtacacacacctgaagaggcacacaataaaaattaa |
38019637 |
T |
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| Q |
303 |
ctgctttgtgcatatctga |
321 |
Q |
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||||||||||||||||||| |
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| T |
38019638 |
ctgctttgtgcatatctga |
38019656 |
T |
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