View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6862_low_1 (Length: 1020)
Name: NF6862_low_1
Description: NF6862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6862_low_1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 960; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 1 - 1020
Target Start/End: Original strand, 23332717 - 23333736
Alignment:
| Q |
1 |
atagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttcagctcagcccaaccatcccgca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332717 |
atagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttcagctcagcccaaccatcccgca |
23332816 |
T |
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| Q |
101 |
gatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacaccatattcctt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23332817 |
gataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcaaaccatattcctt |
23332916 |
T |
|
| Q |
201 |
ggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacataccaaaacagtgcaatgcccacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23332917 |
ggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacataccaaaacagtgcaatgcccacaa |
23333016 |
T |
|
| Q |
301 |
atgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgtaagtattgtataactttcagaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333017 |
atgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgtaagtattgtataactttcagaaa |
23333116 |
T |
|
| Q |
401 |
atgcaccaagaaacaaataagtcttcgtagcattacattccaaaagtagccaaattaaaaccatcgcctaatattcaaaacaacatgtggccagcaaaat |
500 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333117 |
atgcaccaagaaacaaataagtcttcatagcattactttccaaaagtagccaaattaaaaccatcgcctaatattcaaaacaacatgtggccagcaaaat |
23333216 |
T |
|
| Q |
501 |
agagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaaaatctggtgctcagcttaattt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333217 |
agagaagaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaaaatctggtgctcagcttaattt |
23333316 |
T |
|
| Q |
601 |
taatggtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttgttatactttttgggagtattac |
700 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23333317 |
taatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttgttataccttttgggagtattac |
23333416 |
T |
|
| Q |
701 |
acatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatt |
800 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333417 |
acatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatt |
23333516 |
T |
|
| Q |
801 |
tgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaa |
900 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333517 |
tgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaa |
23333616 |
T |
|
| Q |
901 |
gctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacattttt |
1000 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23333617 |
gctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacattttt |
23333716 |
T |
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| Q |
1001 |
cctggtaaatcatgacacaa |
1020 |
Q |
| |
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|||||||||||||||||||| |
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| T |
23333717 |
cctggtaaatcatgacacaa |
23333736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
106 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacaccatattcctt |
200 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| |||||||||||| |
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| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
106 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
173 |
Q |
| |
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||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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