View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6862_low_3 (Length: 406)

Name: NF6862_low_3
Description: NF6862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6862_low_3
NF6862_low_3
[»] chr1 (4 HSPs)
chr1 (156-400)||(48942923-48943165)
chr1 (20-82)||(48943239-48943301)
chr1 (20-82)||(28637967-28638029)
chr1 (155-262)||(28638094-28638202)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 156 - 400
Target Start/End: Complemental strand, 48943165 - 48942923
Alignment:
Q  156 caacagaaccacgtgcatgcaaagatacaataaatatccaagactattacaacgatttttcctcacactgttagattctgattttcttagcaactaattc 255  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48943165 caacagaaccacgtgcatgcaacgatacaataaatatccaagactattacaacgatttttcctcacactgttagattctgattttctcagcaactaattc 48943066  T
Q  256 agcatttacagagagagagaaggaatagaaactcacggacttggaggatttatcagaaagtgaacaattaatattgttccaacggattgtgaccggagta 355  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48943065 agcatttacagagagaga--aggaatagaaactcacggacttggaggatttatcagaaagtgaacaattaatattgttccaacggattgtgaccggggta 48942968  T
Q  356 acctttccggtggaaggaggagtttcatcgtcgttgattggaaca 400  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  48942967 acctttccggtggaaggaggagtttcaccgtcgttgattggaaca 48942923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 48943301 - 48943239
Alignment:
Q  20 aataatcttcccggttttgcttctccactcagatttttaagcaaaaatctcacctattcattt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48943301 aataatcttcccggttttgcttctccactcagatttttaagcaaaaatctcacctattcattt 48943239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 28637967 - 28638029
Alignment:
Q  20 aataatcttcccggttttgcttctccactcagatttttaagcaaaaatctcacctattcattt 82  Q
    ||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||    
T  28637967 aataatcttccaggttttgctactccgctcacatttttaagcaaaaatctcacctattaattt 28638029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 28638094 - 28638202
Alignment:
Q  155 gcaacagaaccacgtgcatgcaaagatacaataaatatccaagactattacaacgatttttcctcacactgttagattctgattttctt-agcaactaat 253  Q
    |||||| ||| ||||||||||||  ||| |||||| ||||||    | ||||| ||||||||||||||||  |||||||| ||||| || |||||| |||    
T  28638094 gcaacacaactacgtgcatgcaacaataaaataaacatccaaagtaaatacaatgatttttcctcacactactagattctaatttttttcagcaaccaat 28638193  T
Q  254 tcagcattt 262  Q
    |||| ||||    
T  28638194 tcaggattt 28638202  T

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