View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_high_6 (Length: 410)
Name: NF6863A_high_6
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 40542705 - 40543095
Alignment:
| Q |
14 |
gaagtgttaaaaagagaagccccannnnnnnncaaaaaattgttttggtctagtaactagtttgctcgtgaaagttttaaactccagaatatttatcaaa |
113 |
Q |
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| T |
40542705 |
gaagtgttaaaaagagaagcccaattttttctcaaaatattgttttggtctagtaactagtttgctcgtgaaagttttaaactccaaaatatttatcaaa |
40542804 |
T |
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| Q |
114 |
ttattcatgttcttttttattctcttttatttcatgtgtcaatgagagaggtgaatgatgcaatttattccatgccttcctataaagctctagatcttga |
213 |
Q |
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| T |
40542805 |
ttattcatgttcttttttattctcttttatttcatgtgtcaatgagagaggtgaatgatgcaatttattccatgccttcctataaagctctagatcttga |
40542904 |
T |
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| Q |
214 |
tggatttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatccct |
313 |
Q |
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| T |
40542905 |
tg-atttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatccct |
40543003 |
T |
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| Q |
314 |
cctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgattatcctttataacat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40543004 |
cctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgactatcctttataacat |
40543095 |
T |
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