View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_1 (Length: 894)
Name: NF6863A_low_1
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_1 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 41)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 19415536 - 19415993
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415536 |
catcaacaaagaatgaagattatgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
19415635 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415636 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
19415735 |
T |
|
| Q |
219 |
agaaactgagctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtattttgttattcataactgaacagatgata |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415736 |
agaaactgagctgcagttagttaaggttagttaaacctacctcacaatttcattgattagactatagagtattttgttattcataactgaacagatgata |
19415835 |
T |
|
| Q |
319 |
agttttattgatcatttcatagatta---nnnnnnnnnattatataattccatttaacttatatccattgcatttgcttcatatttatcaggtgattaat |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19415836 |
agttttattgatcatttcatagattattttttttttttattatataattccatttaacttatatccattgcatttgcttcataattatcaggtgattaat |
19415935 |
T |
|
| Q |
416 |
gattatggctgtgacagaagattgtggatataattttccaaacaaagtcatgaaatgg |
473 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
19415936 |
gattatggctgtgacagaagatcgtgtatataattttccaaacaaagtcatcaaatgg |
19415993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 413
Target Start/End: Original strand, 17943315 - 17943701
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || ||||| ||| |||| || || ||||| || |||||||||| |||||| |||||||||||||||||| | ||| |||| |
|
|
| T |
17943315 |
agaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttttat |
17943414 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17943415 |
tagaaaatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaaactga |
17943514 |
T |
|
| Q |
228 |
gctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtattttgttattcataactgaacagatgataagttttatt |
327 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17943515 |
gctgctgttagttaaggttagttaaacctatttcacagttacattgattagactatagagtattttgttattcataactgaacagatgataagttttatt |
17943614 |
T |
|
| Q |
328 |
gatcatttcatagatta-nnnnnnnnnattatataattccatttaacttatatccattgcatttgcttcatatttatcaggtgatta |
413 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17943615 |
gatcatttcatagattatttttgttttattatataattccatttaacttatatccattgcatttgcctcatatttatcaggtgatta |
17943701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 491 - 693
Target Start/End: Original strand, 17943778 - 17943980
Alignment:
| Q |
491 |
actgttattggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtatctctcttatttttattagtttatgta |
590 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
17943778 |
actgttcttggggattgtcctcatctcatgtatctccctctttaattttggacagtgttgcttatgttatgtatctctcttctttttattagtttatgta |
17943877 |
T |
|
| Q |
591 |
tcagtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcat |
690 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17943878 |
tcactttatgcagatagttgcagaataagagtttgtgtgcaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcat |
17943977 |
T |
|
| Q |
691 |
tac |
693 |
Q |
| |
|
||| |
|
|
| T |
17943978 |
tac |
17943980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 28 - 292
Target Start/End: Original strand, 18148179 - 18148443
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || | ||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
18148179 |
agaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
18148278 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
||| ||||| |||||||| ||||| ||||| |||||||||||| | | |||||||||||||| || ||||||||||||||||||||||| ||| |||| |
|
|
| T |
18148279 |
taggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgccgaagctga |
18148378 |
T |
|
| Q |
228 |
gctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtattt |
292 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
18148379 |
gctcctgctagttaaggttagttaaacctacctcacagtttcattgattagactacagagtattt |
18148443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 28 - 302
Target Start/End: Original strand, 19462541 - 19462815
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || | ||| || |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
19462541 |
agaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgtttcttat |
19462640 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
| | ||||| |||||||| ||||| ||||| |||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19462641 |
tcggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgcagaaactga |
19462740 |
T |
|
| Q |
228 |
gctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtattttgttattcat |
302 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||| | |||||||||||| |||| |||||||||| | |||||| |
|
|
| T |
19462741 |
gctcctgctagttaaggttagttaaacctacctcatagtttcattgattaaactacagagtattttatcattcat |
19462815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 18117317 - 18117517
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18117317 |
agaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatgtttcttat |
18117416 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
||| ||||| |||||||| ||||| ||||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
18117417 |
taggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgctgaaactga |
18117516 |
T |
|
| Q |
228 |
g |
228 |
Q |
| |
|
| |
|
|
| T |
18117517 |
g |
18117517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 60 - 292
Target Start/End: Original strand, 18104889 - 18105121
Alignment:
| Q |
60 |
ttgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggttta |
159 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
18104889 |
ttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatgtttcttattaggaaatggaggcatgcatactttcggttag |
18104988 |
T |
|
| Q |
160 |
ttgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagtttaacctacc |
259 |
Q |
| |
|
|| ||||||||| | | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | |||| |
|
|
| T |
18104989 |
ttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgccgaaactgagctcctgctagttaaggttagttaattttacc |
18105088 |
T |
|
| Q |
260 |
tcacaatttcattgattagactatagagtattt |
292 |
Q |
| |
|
||||| |||| |||||| ||||| ||||||||| |
|
|
| T |
18105089 |
tcacattttcgttgatttgactacagagtattt |
18105121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 17726180 - 17725914
Alignment:
| Q |
24 |
acaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttc |
123 |
Q |
| |
|
||||||||||||||| |||| || || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
17726180 |
acaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttc |
17726081 |
T |
|
| Q |
124 |
ttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagc-tttcgcagaa |
222 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |||| | | ||| |||||||||||||| | ||||||||||||||| ||| |||||| |
|
|
| T |
17726080 |
ttattagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagctttttgcagaa |
17725981 |
T |
|
| Q |
223 |
actgagctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtatt |
291 |
Q |
| |
|
| ||| | | ||||||||||||||| ||| ||||||| ||| |||||| |||||||||||||| |
|
|
| T |
17725980 |
atagagttcttgttagttaaggttagtgaaacatacctcagtatt--attgatctgactatagagtatt |
17725914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 19027409 - 19027143
Alignment:
| Q |
24 |
acaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttc |
123 |
Q |
| |
|
||||||||||||||| |||| || || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
19027409 |
acaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttc |
19027310 |
T |
|
| Q |
124 |
ttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagc-tttcgcagaa |
222 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |||| | | ||| |||||||||||||| | ||||||||||||||| ||| |||||| |
|
|
| T |
19027309 |
ttattagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagctttttgcagaa |
19027210 |
T |
|
| Q |
223 |
actgagctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtatt |
291 |
Q |
| |
|
| ||| | | ||||||||||||||| ||| ||||||| ||| |||||| |||||||||||||| |
|
|
| T |
19027209 |
atagagttcttgttagttaaggttagtgaaacatacctcagtatt--attgatctgactatagagtatt |
19027143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 18166513 - 18166717
Alignment:
| Q |
24 |
acaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttc |
123 |
Q |
| |
|
||||||||||||||| |||| || || | ||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
18166513 |
acaaagaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttc |
18166612 |
T |
|
| Q |
124 |
ttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaa |
223 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||||| | | ||| ||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
18166613 |
ttattagaaaatggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttctcagaaa |
18166712 |
T |
|
| Q |
224 |
ctgag |
228 |
Q |
| |
|
||||| |
|
|
| T |
18166713 |
ctgag |
18166717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 19426042 - 19426231
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||||||||||||||| |||| || || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19426042 |
catctacaaagaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttcttt |
19426141 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
|| |||||||||||||| | |||||||||||| |||||| ||||||||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
19426142 |
gttccttattagaaaatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttactttgatcgtaaagttaaa |
19426231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 18872526 - 18872315
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || | ||| ||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18872526 |
catctacaaagaatgaagattatgcttctataagagaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttcttt |
18872427 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||| || |||| | | ||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
18872426 |
gtttcttattaggaaatggaggcatgcatacttttggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttcgc |
18872327 |
T |
|
| Q |
219 |
agaaactgagct |
230 |
Q |
| |
|
||| | |||||| |
|
|
| T |
18872326 |
agatattgagct |
18872315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 19382245 - 19382484
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||| ||||||||||| |||| || || | ||| || ||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||| | |
|
|
| T |
19382245 |
catctacagagaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttcttt |
19382344 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| || |||| | | ||| |||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
19382345 |
atttcttattaggaaatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgc |
19382444 |
T |
|
| Q |
219 |
agaaactgagctgctattagttaaggttagtttaacctac |
258 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
19382445 |
agaaattgagctgctgccagttaaggttagtgaaacctac |
19382484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 19465704 - 19465943
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||| ||||||| ||| |||| || || ||||| |||||||||||| | | |||||| |||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
19465704 |
catctacagagaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttcttt |
19465803 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| || || | | | ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19465804 |
gtttcttattaggaaatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgc |
19465903 |
T |
|
| Q |
219 |
agaaactgagctgctattagttaaggttagtttaacctac |
258 |
Q |
| |
|
||||| |||||| ||| ||||||||||||| ||||||| |
|
|
| T |
19465904 |
agaaattgagctcctaccagttaaggttagtgaaacctac |
19465943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 57 - 292
Target Start/End: Original strand, 19377009 - 19377244
Alignment:
| Q |
57 |
tcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggt |
156 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||| | || |
|
|
| T |
19377009 |
tcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggcatgcatactttcagt |
19377108 |
T |
|
| Q |
157 |
ttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagtttaacct |
256 |
Q |
| |
|
||||| ||||||| | | ||| ||||||||||||||| ||||||||||||| || |||| ||||| | |||| || ||||||||| ||| |||||| |
|
|
| T |
19377109 |
ttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaacaggtttcaaagaaattaagctcctgccagttaaggtcagtgtaacct |
19377208 |
T |
|
| Q |
257 |
acctcacaatttcattgattagactatagagtattt |
292 |
Q |
| |
|
|| |||| ||| |||||| || |||| ||||||| |
|
|
| T |
19377209 |
acaacacagttttattgatctgattataaagtattt |
19377244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 19355067 - 19355342
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||||| ||||||||| | || || || ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
19355067 |
catctacaaaaaatgaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttcttt |
19355166 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| ||||||||||| | ||| |||||||||||||| ||||||||||||| | ||| |
|
|
| T |
19355167 |
gtttctaattagaaaatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaacgggtttaaa |
19355266 |
T |
|
| Q |
219 |
agaaactgag---ctgctattagttaaggttagtttaacctacctcacaatttcattgattagactatagagtattt |
292 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| ||||||| ||| | ||| |||||| ||||||| ||||||| |
|
|
| T |
19355267 |
agaaattgagctcctgctatt-gttaaggttagtggaacctacttcatagttttattgatctgactataaagtattt |
19355342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 19394501 - 19394710
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||| ||||||||||| | || || || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19394501 |
catctacagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttcttt |
19394600 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||| ||| |||| || |||| | | ||| |||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
19394601 |
gtttcttattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgc |
19394700 |
T |
|
| Q |
219 |
agaaactgag |
228 |
Q |
| |
|
||||| |||| |
|
|
| T |
19394701 |
agaaattgag |
19394710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 19438307 - 19438507
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || | ||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19438307 |
agaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggttctatgtttcttat |
19438406 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
||| ||||| |||||||| ||||| ||||| |||||| |||| | | |||| |||||||||||| | ||||||||||||||||||||| ||| |||| |
|
|
| T |
19438407 |
taggaaatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagctttcgctgaacctga |
19438506 |
T |
|
| Q |
228 |
g |
228 |
Q |
| |
|
| |
|
|
| T |
19438507 |
g |
19438507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 25464437 - 25464609
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||||||||| |
|
|
| T |
25464437 |
aaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatggaggcatgcatact |
25464536 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaa |
223 |
Q |
| |
|
| ||||||||| || ||||| | ||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25464537 |
ttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaaccactttcgcagaaa |
25464609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 19352744 - 19352947
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||||||| ||||||||| | |||| || || ||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
19352744 |
catcaacagagaatgaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttcttt |
19352843 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||| || |||||| || || ||||| ||||| | |||||||||||||||||||| |
|
|
| T |
19352844 |
gtttcttattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgt |
19352943 |
T |
|
| Q |
219 |
agaa |
222 |
Q |
| |
|
|||| |
|
|
| T |
19352944 |
agaa |
19352947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 19335402 - 19335550
Alignment:
| Q |
57 |
tcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggt |
156 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
19335402 |
tcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcttactttcggt |
19335501 |
T |
|
| Q |
157 |
ttattgatagagtggccggcaatctctatgttactttggtcgtaaagtt |
205 |
Q |
| |
|
|| || ||||||||| | ||| |||||||||||||| |||||||||| |
|
|
| T |
19335502 |
ttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagtt |
19335550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 14894996 - 14894793
Alignment:
| Q |
61 |
tgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggtttat |
160 |
Q |
| |
|
||||||| || |||||| | ||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
14894996 |
tgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggcatgcatactttcggtttat |
14894897 |
T |
|
| Q |
161 |
tgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagtttaacctacct |
260 |
Q |
| |
|
|||| |||| | | ||| ||||||||||||||| || ||||||||| | |||| | | ||| |||||| | |||||||||||||| |||||||| | |
|
|
| T |
14894896 |
tgatggagtaggtgacaagctctatgttactttgatcccaaagttaaacaactttggaaaaaattgagctccggctagttaaggttagtgtaacctactt |
14894797 |
T |
|
| Q |
261 |
caca |
264 |
Q |
| |
|
|||| |
|
|
| T |
14894796 |
caca |
14894793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 17951207 - 17951378
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| |
|
|
| T |
17951207 |
aaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttattcgaaaatggaggcatgcatact |
17951306 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaa |
222 |
Q |
| |
|
| |||||||| || |||||| || |||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
17951307 |
ttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttttgcagaa |
17951378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 18017374 - 18017577
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||| ||||||| ||| |||| || || ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
18017374 |
catctacagagaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttcttt |
18017473 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||||| || |||||| || || ||||| |||||| | |||||||||||||||||||| |
|
|
| T |
18017474 |
gtttctcattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgt |
18017573 |
T |
|
| Q |
219 |
agaa |
222 |
Q |
| |
|
|||| |
|
|
| T |
18017574 |
agaa |
18017577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 17944103 - 17944185
Alignment:
| Q |
790 |
atatgataacaaatgcttaaagttaacaagttctaataatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
872 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17944103 |
atatgataacaaatgcttaaagttaacaaattctaacaatatacatatttgtaaagaaaatactgaagtcttccctgcatttt |
17944185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 19401087 - 19401275
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| | || || || ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
|
|
| T |
19401087 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
19401186 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttc |
216 |
Q |
| |
|
||||||||| ||||||||||| || ||||| || || |||||| || |||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
19401187 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
19401275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 19456702 - 19456852
Alignment:
| Q |
73 |
tgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggc |
172 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||||| || |||| || |||||| |
|
|
| T |
19456702 |
tgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatacttttgggttatatatggagtggg |
19456801 |
T |
|
| Q |
173 |
cggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaa |
223 |
Q |
| |
|
|| ||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
19456802 |
taacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaa |
19456852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 18109791 - 18110012
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||| ||| |||| || || ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
18109791 |
agaatgaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgttat |
18109890 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
|| ||||| |||||||||||||| || ||||| || |||||| || |||||||| || ||| | |||||||| ||||||||| || ||| ||| |
|
|
| T |
18109891 |
caggaaatggaggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttga |
18109990 |
T |
|
| Q |
228 |
gctgctattagttaaggttagt |
249 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
18109991 |
gcttctgctagtaaaggttagt |
18110012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 499 - 564
Target Start/End: Original strand, 19415991 - 19416056
Alignment:
| Q |
499 |
tggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtat |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19415991 |
tggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtat |
19416056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 16678591 - 16678789
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| ||||||||||| || ||||||| || ||||| |||||||||||||| |||||||||||| | ||||||||||| ||||| ||||| |||||| |
|
|
| T |
16678591 |
aaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacacatact |
16678690 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagt |
249 |
Q |
| |
|
| ||||||||| |||||| || ||| || ||||| |||||| | ||||||||||||| ||||| ||||| |||| | ||| |||| ||||||||| |
|
|
| T |
16678691 |
atcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggttagt |
16678789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 19466264 - 19466330
Alignment:
| Q |
596 |
ttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc |
662 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
19466264 |
ttatgcagatagttgcagaataagagtttgtgtagaaactttgctgcttttaattttacattatagc |
19466330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 18148709 - 18148778
Alignment:
| Q |
593 |
agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc |
662 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |||| |||||| ||||| |||||||||| |
|
|
| T |
18148709 |
agtttatgcagatagttgcagaataagagtttgtgtagaaattttgctgcttttaatttcacattatagc |
18148778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 593 - 693
Target Start/End: Original strand, 18117622 - 18117722
Alignment:
| Q |
593 |
agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta |
692 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||||| ||||||||| ||||| |||||||||||||||||| || |||||| | ||||||||| ||||| |
|
|
| T |
18117622 |
agtttatgcggatagttgcagaataagaaattgtgcagaaactttgttgcttataattttacattatagctaaatcccatatgaaatttgattttcatta |
18117721 |
T |
|
| Q |
693 |
c |
693 |
Q |
| |
|
| |
|
|
| T |
18117722 |
c |
18117722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 24493375 - 24493199
Alignment:
| Q |
72 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtgg |
171 |
Q |
| |
|
|||||||| || |||| ||||||||| ||| ||| |||||| || | ||||||||||| ||||| ||||| || |||| ||||||||| ||| |||||| |
|
|
| T |
24493375 |
atgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagtgg |
24493276 |
T |
|
| Q |
172 |
ccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagtt |
250 |
Q |
| |
|
| || ||||||| |||||| | || ||||| ||||||||| |||||| |||| | || ||||||||||||||| |
|
|
| T |
24493275 |
gtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaaaatgagttcctgctagttaaggttagtt |
24493199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 19438510 - 19438587
Alignment:
| Q |
246 |
tagtttaacctacctcacaatttcattgattagactatagagtattttgttattcataactgaacagatgataagttt |
323 |
Q |
| |
|
||||| |||||| |||||| ||||||||||| |||| ||||||||||| | |||||||| | |||| |||| |||||| |
|
|
| T |
19438510 |
tagttaaacctatctcacagtttcattgatttgactgtagagtattttatgattcataatttaacacatgacaagttt |
19438587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 693
Target Start/End: Original strand, 18105395 - 18105494
Alignment:
| Q |
593 |
agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta |
692 |
Q |
| |
|
||||||||| |||| ||||| ||||||| |||||| |||||||| ||||| |||||||||||||||||| || |||||| | |||| |||| ||||| |
|
|
| T |
18105395 |
agtttatgcggatagttgcaaaataagaaattgtgtagaaactttc-tgcttataattttacattatagctaaatcccatatgaaattttattttcatta |
18105493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 693
Target Start/End: Original strand, 19463086 - 19463166
Alignment:
| Q |
613 |
gaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcattac |
693 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||| |||||||||||||| ||| || |||||| | ||||||||| |||||| |
|
|
| T |
19463086 |
gaataagaaattgtgtagaaactttgatgcttataattttacattatatctaaatcccatatgaaatttgattttcattac |
19463166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 17725555 - 17725508
Alignment:
| Q |
591 |
tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg |
638 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
17725555 |
tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg |
17725508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 18105170 - 18105228
Alignment:
| Q |
358 |
tataattccatttaac--ttatatccattgcatttgcttcata-tttatcaggtgatta |
413 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
18105170 |
tataattccatttaaaagttatatcaattgcatttgcttcatattttatcaggtgatta |
18105228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 19026784 - 19026737
Alignment:
| Q |
591 |
tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg |
638 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
19026784 |
tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg |
19026737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 539
Target Start/End: Original strand, 19382783 - 19382853
Alignment:
| Q |
469 |
aatggttgcattcattttgtcaactgttattggggcttgtcctcacatcatgtatctccctccttaatttt |
539 |
Q |
| |
|
||||||| |||||||||||| | |||| || ||||||| || ||| ||||||||||| |||||||||||| |
|
|
| T |
19382783 |
aatggttacattcattttgtaagttgttctttgggcttggccacacctcatgtatctctctccttaatttt |
19382853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 13665596 - 13665317
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||||||||||||||| | || || || ||||| |||||| | || || ||||| || |||||||||| ||||||||||||||| ||||||||| | |
|
|
| T |
13665596 |
catctacaaagaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttcttt |
13665497 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||| |||||||||||| || |||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
13665496 |
gtttcttattagaaaatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttcgc |
13665397 |
T |
|
| Q |
219 |
agaaactgagctgctattagttaaggttagtt--taacctacctcacaatttcattgattagactatagagtattttgtt |
296 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
13665396 |
aggaactgagctgctgttagttaaggttagttaaaaacctacttcacagtttcattgattagactatagaatattttgtt |
13665317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 354 - 465
Target Start/End: Complemental strand, 13665102 - 13665001
Alignment:
| Q |
354 |
attatataattccatttaacttatatccattgcatttgcttcatatttatcaggtgattaatgattatggctgtgacagaagattgtggatataattttc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
13665102 |
attatataattccatttaacttatatccattgcatttgcttcatatttatcaggtg-------attatggctgtgac---agatcgtggataaaattttc |
13665013 |
T |
|
| Q |
454 |
caaacaaagtca |
465 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13665012 |
caaacaaagtca |
13665001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 587
Target Start/End: Complemental strand, 13664933 - 13664864
Alignment:
| Q |
519 |
tgtatctccctccttaattttggacagtgttt-cttatgttacgtatctctcttatttttattagtttat |
587 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
13664933 |
tgtatctccctccttaatattggacagtgtttgcttatgttatgtatccctcttttttttattaatttat |
13664864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 832 - 866
Target Start/End: Complemental strand, 13664124 - 13664090
Alignment:
| Q |
832 |
acatatttgtaaagaaaatactgaagtcttccctg |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13664124 |
acatatttgtaaagaaaatactgaagtcttccctg |
13664090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 15536885 - 15537141
Alignment:
| Q |
19 |
catcaacaaagaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctat |
118 |
Q |
| |
|
|||| ||| ||||||||||| |||| || | ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
15536885 |
catccacagagaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttcttt |
15536984 |
T |
|
| Q |
119 |
ttttcttattagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| ||||| ||| | | ||| |||||||||||||| ||||||||||||| | |||| | |
|
|
| T |
15536985 |
gtttcttattagaaaatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcac |
15537084 |
T |
|
| Q |
219 |
agaaactgagctgctattagttaaggttagtttaacctacctcacaatttcattgat |
275 |
Q |
| |
|
||||| |||||| || |||||||||| ||| ||||||| | ||| |||||||||| |
|
|
| T |
15537085 |
agaaattgagctcctgctagttaaggtcagtggaacctacttaacagtttcattgat |
15537141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 2709183 - 2708946
Alignment:
| Q |
57 |
tcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatacttccggt |
156 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| || | ||||||||||| ||||| ||| | |||||| |||| |
|
|
| T |
2709183 |
tcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggaggaacacatactatcggt |
2709084 |
T |
|
| Q |
157 |
ttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgctattagttaaggttagtttaacct |
256 |
Q |
| |
|
|||||||| |||| | | ||| |||||||| |||||| | |||||||||| | ||||| ||||| ||||| ||| |||||||||||| | ||||| |
|
|
| T |
2709083 |
ttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttctacaagttaaggttag-tgaacct |
2708985 |
T |
|
| Q |
257 |
acctcacaatttcattgattagactatagagtattttgtt |
296 |
Q |
| |
|
|| ||||| ||| |||||| | |||||| | ||||||||| |
|
|
| T |
2708984 |
acttcacagttt-attgatcaaactatacaatattttgtt |
2708946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 8460927 - 8461129
Alignment:
| Q |
28 |
agaatgaagattatgattcaatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
127 |
Q |
| |
|
||||||||||| |||| || || | ||| ||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||| | |||||||| |
|
|
| T |
8460927 |
agaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttcttat |
8461026 |
T |
|
| Q |
128 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactga |
227 |
Q |
| |
|
||| ||||| ||||||||||||| || ||||||||| || ||| | ||| ||||||| | |||| | |||||||||| ||| ||||||||||| ||| |
|
|
| T |
8461027 |
taggaaatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaattga |
8461126 |
T |
|
| Q |
228 |
gct |
230 |
Q |
| |
|
||| |
|
|
| T |
8461127 |
gct |
8461129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 21970 - 22127
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||||||||| |||||||||||||||| ||||||| | ||||| |||| |||||| ||||||||||||| |
|
|
| T |
21970 |
aaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttctcattacaaaatggaggcatgcatact |
22069 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| | | ||||||||||| |
|
|
| T |
22070 |
atcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 2186 - 2029
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| ||||||||||| || ||||| | ||||||||||| |||||||||||||||| |||||| | ||||| |||| |||||| ||||||||||||| |
|
|
| T |
2186 |
aaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatact |
2087 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| | | ||||||||||| |
|
|
| T |
2086 |
atcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 2716 - 2558
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctggggg-atttgtggttctatttttcttattagaaaatgcaggcatgcatac |
149 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||| | ||||| |||| |||||| |||||||||||| |
|
|
| T |
2716 |
aaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttctcattacaaaatggaggcatgcatac |
2617 |
T |
|
| Q |
150 |
ttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
| ||||||||||||||||||| | ||| ||||||||||||| | | ||||||||||| |
|
|
| T |
2616 |
tatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 6787 - 6944
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| ||||||||||| || ||||| | ||||||||||| |||||||||||||||| |||||| | ||||| |||| |||||| ||||||||||||| |
|
|
| T |
6787 |
aaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatact |
6886 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| | | ||||||||||| |
|
|
| T |
6887 |
atcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
6944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 11885 - 12042
Alignment:
| Q |
51 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
150 |
Q |
| |
|
||||| ||||||||||| || ||||| | ||||||||||| |||||||||||||||| |||||| | ||||| |||| |||||| ||||||||||||| |
|
|
| T |
11885 |
aaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaatggaggcatgcatact |
11984 |
T |
|
| Q |
151 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaa |
208 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| | | ||||||||||| |
|
|
| T |
11985 |
atcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
12042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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