View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_104 (Length: 287)

Name: NF6863A_low_104
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_104
NF6863A_low_104
[»] chr5 (7 HSPs)
chr5 (1-281)||(3202874-3203154)
chr5 (5-281)||(3208852-3209128)
chr5 (36-280)||(3216822-3217075)
chr5 (152-186)||(3232106-3232140)
chr5 (153-186)||(3177901-3177934)
chr5 (152-205)||(3221873-3221926)
chr5 (153-186)||(3240906-3240939)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3202874 - 3203154
Alignment:
Q  1 attggcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202874 attggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaa 3202973  T
Q  101 tttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202974 tttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccct 3203073  T
Q  201 catcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttc 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3203074 catcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttc 3203154  T

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Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 3208852 - 3209128
Alignment:
Q  5 gcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaattta 104  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||    
T  3208852 gcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggccaacatcatcgtatggaagggatgaattta 3208951  T
Q  105 cgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatc 204  Q
    | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  3208952 caaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatc 3209051  T
Q  205 ggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttc 281  Q
     ||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  3209052 agaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttc 3209128  T

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Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 36 - 280
Target Start/End: Original strand, 3216822 - 3217075
Alignment:
Q  36 gccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgat 126  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||         |||| |||||||||||||||||     
T  3216822 gccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgag 3216921  T
Q  127 cttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagg 226  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||    
T  3216922 cttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagg 3217021  T
Q  227 gttattcctgtgtccagcattccaattatgatccctttaccttgattggaattt 280  Q
    | ||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  3217022 gatattcctgtgtccaggattccaattatgatccctttaccgagattggaattt 3217075  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 3232106 - 3232140
Alignment:
Q  152 gtgaattcacaatggccattccattttgcaggtgg 186  Q
    ||||||||||||||||| |||||||||||||||||    
T  3232106 gtgaattcacaatggcctttccattttgcaggtgg 3232140  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
Q  153 tgaattcacaatggccattccattttgcaggtgg 186  Q
    |||||||||||||||| |||||||||||||||||    
T  3177934 tgaattcacaatggcctttccattttgcaggtgg 3177901  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 3221873 - 3221926
Alignment:
Q  152 gtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcg 205  Q
    |||||||| |||||||| ||||||||||||||||| |  |||||||| ||||||    
T  3221873 gtgaattcgcaatggcctttccattttgcaggtggtggcggcattccttcatcg 3221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
Q  153 tgaattcacaatggccattccattttgcaggtgg 186  Q
    |||||||||||||||| |||||||||||||||||    
T  3240906 tgaattcacaatggcctttccattttgcaggtgg 3240939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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