View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_108 (Length: 282)

Name: NF6863A_low_108
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_108
NF6863A_low_108
[»] chr1 (4 HSPs)
chr1 (7-282)||(7440615-7440894)
chr1 (7-99)||(6397753-6397845)
chr1 (37-85)||(42517120-42517168)
chr1 (37-111)||(41941063-41941137)
[»] chr8 (1 HSPs)
chr8 (7-106)||(4490295-4490394)
[»] chr7 (1 HSPs)
chr7 (26-99)||(24447163-24447236)
[»] chr5 (2 HSPs)
chr5 (7-80)||(19340568-19340641)
chr5 (17-111)||(19276885-19276979)
[»] chr4 (2 HSPs)
chr4 (44-109)||(36010202-36010267)
chr4 (16-110)||(3284201-3284295)
[»] scaffold0154 (1 HSPs)
scaffold0154 (37-80)||(19342-19385)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 7440894 - 7440615
Alignment:
Q  7 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  7440894 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaata 7440795  T
Q  107 ttacctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataa 206  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7440794 ttacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataa 7440695  T
Q  207 tttataacgcttgatttcctcaattcactctagcc----atttaacaaagaagaaaattgtgatgacttataaaggagtc 282  Q
    |||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  7440694 tttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtc 7440615  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 6397753 - 6397845
Alignment:
Q  7 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 99  Q
    ||||||| | ||||||||||||| ||||| ||||||||| ||  ||||| ||||||||| ||||||||||||||||| | |||||||||||||    
T  6397753 atagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt 6397845  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
Q  37 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattact 85  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  42517168 tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact 42517120  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
Q  37 tgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 111  Q
    ||||||||||||| |||||  ||||||||  |||||||||| || |||| ||| ||||||||| |||||||||||    
T  41941137 tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc 41941063  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 4490394 - 4490295
Alignment:
Q  7 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata 106  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||  ||||| ||||| ||  |||||||||||||| |||   |||||||||||| ||||||    
T  4490394 atagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata 4490295  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
Q  26 gtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt 99  Q
    |||| ||||| ||||||||||| ||||||| || |||||| ||||| ||||| || |||||||| |||||||||    
T  24447236 gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt 24447163  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 19340641 - 19340568
Alignment:
Q  7 atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagta 80  Q
    ||||||| | ||||||||  ||||||||  | ||||||||||||||||  ||||||||| ||||||||||||||    
T  19340641 atagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 19276979 - 19276885
Alignment:
Q  17 tatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc 111  Q
    |||||||| |||| ||||| |||||||| |||| |||||  |||||| | ||||||||||||||  | | ||| ||||||| | |||||||||||    
T  19276979 tatagtttcgtttgtattactgtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattacaatattacc 19276885  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 36010267 - 36010202
Alignment:
Q  44 aattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatatta 109  Q
    ||||| ||||||  |||||||||||||||||||| || |||| ||| ||||||||| |||||||||    
T  36010267 aattaaagtttcaatgttacaaacaatatatataatactacttctacgattcagttcacaatatta 36010202  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 3284201 - 3284295
Alignment:
Q  16 ttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattac 110  Q
    ||||||||  |||||||||| ||||||||||||| ||||  | ||||||| ||| ||||||| || |||| |||  ||| |||| ||||||||||    
T  3284201 ttatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac 3284295  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 19385 - 19342
Alignment:
Q  37 tgtgatgaattagagtttcggtgttacaaacaatatatatagta 80  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  19385 tgtgatgaattagggtttcactgttacaaacaatatatatagta 19342  T

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