View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_109 (Length: 281)

Name: NF6863A_low_109
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_109
NF6863A_low_109
[»] chr6 (27 HSPs)
chr6 (7-268)||(5688749-5689016)
chr6 (7-268)||(5177921-5178177)
chr6 (21-268)||(5279746-5279991)
chr6 (147-257)||(5242504-5242614)
chr6 (123-258)||(5126597-5126732)
chr6 (45-265)||(5065338-5065559)
chr6 (147-256)||(5427094-5427203)
chr6 (152-265)||(5346214-5346327)
chr6 (155-268)||(5398228-5398341)
chr6 (149-253)||(5100812-5100916)
chr6 (149-253)||(5135913-5136017)
chr6 (154-268)||(5180773-5180887)
chr6 (138-259)||(5098402-5098523)
chr6 (151-252)||(23127306-23127407)
chr6 (149-268)||(5156007-5156126)
chr6 (149-268)||(5372279-5372398)
chr6 (149-265)||(5351585-5351701)
chr6 (147-265)||(5352855-5352973)
chr6 (154-259)||(5283223-5283328)
chr6 (149-268)||(2939097-2939216)
chr6 (147-258)||(5072674-5072785)
chr6 (154-248)||(5439213-5439307)
chr6 (156-265)||(5253718-5253827)
chr6 (180-268)||(5334367-5334455)
chr6 (151-265)||(5124439-5124553)
chr6 (154-259)||(5256113-5256218)
chr6 (154-265)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (126-258)||(4122615-4122747)
chr4 (76-254)||(25569036-25569217)
chr4 (114-259)||(4132577-4132719)
chr4 (149-259)||(4319296-4319406)
chr4 (147-193)||(7884147-7884193)
chr4 (147-192)||(4346621-4346666)
chr4 (147-192)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (155-258)||(47985393-47985496)
chr3 (155-258)||(48003967-48004070)
chr3 (155-258)||(47994680-47994783)
chr3 (155-258)||(48013252-48013355)
[»] chr7 (1 HSPs)
chr7 (147-265)||(36212913-36213031)
[»] scaffold0294 (1 HSPs)
scaffold0294 (156-252)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 5688749 - 5689016
Alignment:
Q  7 tcattttcataaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccacta---cacac 100  Q
    |||||||||| ||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  5688749 tcattttcatcaccactactaccaacaatgacattgtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccactactacacac 5688848  T
Q  101 aatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5688849 aatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttc 5688948  T
Q  201 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688949 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttc 5689016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 5178177 - 5177921
Alignment:
Q  7 tcattttcataaccactactaacaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatat 105  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||      
T  5178177 tcattttcatcaccactactaacaatgacattgtaatcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaat-- 5178080  T
Q  106 cattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaa 205  Q
        ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5178079 ----ttcttcttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaa 5177984  T
Q  206 aacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttc 268  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5177983 aacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttc 5177921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 5279991 - 5279746
Alignment:
Q  21 actactaacaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgt 119  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||      ||||||||||    
T  5279991 actactaacaatgacattgtattcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaat------ttcttcttgt 5279898  T
Q  120 tcttgaca---ttgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaa 216  Q
    ||||| ||   ||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||    
T  5279897 tcttggcaatattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaa 5279798  T
Q  217 cctccactttgttacaaggttctatacttgatactactctctgtccctcttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5279797 cctccactttgttacaaggttctatacttgatactactctctgaccctcttc 5279746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 5242504 - 5242614
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||||||     
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttc 5242603  T
Q  247 atactactctc 257  Q
    |||||||||||    
T  5242604 atactactctc 5242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 5126597 - 5126732
Alignment:
Q  123 tgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctcca 222  Q
    |||||||||| |||| ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||  ||||| ||| |    
T  5126597 tgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaa 5126696  T
Q  223 ctttgttacaaggttctatacttgatactactctct 258  Q
    ||||||||| || |||||||||||||||||||||||    
T  5126697 ctttgttaccagcttctatacttgatactactctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 5065338 - 5065559
Alignment:
Q  45 ttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttca 143  Q
    |||||||| |||||||| ||| | || | ||||||||| ||||||||| ||||  |||||| |||| |  |||||| | ||||| | ||||   ||||||    
T  5065338 ttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttca 5065437  T
Q  144 cggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatac 243  Q
       |||||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||  |||||  |||||||| || | |||||| ||||    
T  5065438 gcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatac 5065537  T
Q  244 ttgatactactctctgtccctc 265  Q
    |||||||||||||||| |||||    
T  5065538 ttgatactactctctgcccctc 5065559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 5427203 - 5427094
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||||||||||||||||  ||| ||| |||||| ||||| ||| ||||||||| |||| ||||||| |||||||| ||||||||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttg 5427104  T
Q  247 atactactct 256  Q
    ||||||||||    
T  5427103 atactactct 5427094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 5346327 - 5346214
Alignment:
Q  152 ttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatact 251  Q
    ||||||||||| |||||||| || ||| ||||||||||||||||| || |||| ||||   ||||||||||||||||||| ||||||||||||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  252 actctctgtccctc 265  Q
    |||||||| |||||    
T  5346227 actctctggccctc 5346214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 5398341 - 5398228
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||||||| ||||||||||||||| | || || |||||| | |||||||| |||||||||| |||||||||||||||||||||     
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
Q  255 ctctgtccctcttc 268  Q
    || || ||||||||    
T  5398241 ctttgcccctcttc 5398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 5100812 - 5100916
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  249 actac 253  Q
    |||||    
T  5100912 actac 5100916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 5135913 - 5136017
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  249 actac 253  Q
    |||||    
T  5136013 actac 5136017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 5180773 - 5180887
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  254 tctctgtccctcttc 268  Q
     ||||| ||||||||    
T  5180873 cctctgaccctcttc 5180887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 5098523 - 5098402
Alignment:
Q  138 ttttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggtt 237  Q
    |||||||  ||| ||||||||||||| |||||||||| ||| || ||||||||||||| ||| || ||||||  ||  |||||||||||||||| |||||    
T  5098523 ttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggtt 5098424  T
Q  238 ctatacttgatactactctctg 259  Q
    |||||||||||| ||| |||||    
T  5098423 ctatacttgatattaccctctg 5098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  151 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 250  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| || ||||||||   ||||||||||| |||||||| |||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  251 ta 252  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 5156007 - 5156126
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||    | || |||||| ||   |||||||||||||||| |||||||| |||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgat 5156106  T
Q  249 actactctctgtccctcttc 268  Q
    ||||| ||||| ||||||||    
T  5156107 actaccctctgcccctcttc 5156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 5372398 - 5372279
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | || || | |||| ||   | |||||||||||||| |||||||| |||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgat 5372299  T
Q  249 actactctctgtccctcttc 268  Q
    ||||| ||||| ||||||||    
T  5372298 actaccctctgcccctcttc 5372279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 5351701 - 5351585
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | || || |||||| |||  ||||||||||||||||  |||||||||||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  249 actactctctgtccctc 265  Q
    ||||  ||||| |||||    
T  5351601 actaacctctgcccctc 5351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 5352855 - 5352973
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    ||||||| ||||||||| ||||||| |||||| |||||||| |||||||  || || ||||||  ||| ||||| ||||||| || ||| || |||||||    
T  5352855 attggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttg 5352954  T
Q  247 atactactctctgtccctc 265  Q
    ||||||||||||| |||||    
T  5352955 atactactctctgcccctc 5352973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 5283223 - 5283328
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||||| || ||| |||||||||||||||| ||| ||||||||| | |  ||||||||||||||||  ||||| |||||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  254 tctctg 259  Q
     |||||    
T  5283323 cctctg 5283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 2939216 - 2939097
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || | || || | |||| ||   |||||||||||||||| ||||| || |||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgat 2939117  T
Q  249 actactctctgtccctcttc 268  Q
    ||||| ||||| || |||||    
T  2939116 actaccctctgcccttcttc 2939097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 5072674 - 5072785
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||| |||||| |||| |||||||| | |||| || |||||||||||| |||| |||| ||||   ||||||||||||| ||||| ||| ||||||||||    
T  5072674 attgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttg 5072773  T
Q  247 atactactctct 258  Q
    |||||| |||||    
T  5072774 atactaatctct 5072785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 5439307 - 5439213
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    ||||||||||||||||| ||| ||| || ||  |||||||| | || |  |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgat 5439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  156 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 255  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||| |||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  256 tctgtccctc 265  Q
    | || |||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 5334455 - 5334367
Alignment:
Q  180 ttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttc 268  Q
    ||||||| ||||||| | || || |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  ||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttc 5334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 5124439 - 5124553
Alignment:
Q  151 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 250  Q
    ||||||||||||  | ||| | |||||| | |||||||||||| | ||| | ||||||| ||||||  |||||||| |||| |||||||||||| |||||    
T  5124439 gttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatac 5124538  T
Q  251 tactctctgtccctc 265  Q
    || ||| || |||||    
T  5124539 taatctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 5256113 - 5256218
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| | ||||| || ||| ||||||||||||||| | || |  |||||| | || ||||||||||||||||  ||||| |||||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  254 tctctg 259  Q
     |||||    
T  5256213 cctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 5448905 - 5448794
Alignment:
Q  154 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 253  Q
    |||||||||| ||||| |||  ||| |||| |||| ||||| | || || |||||| |||| | |||||||||||| |  |||||||||||||||||||     
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaa 5448806  T
Q  254 tctctgtccctc 265  Q
     ||||| |||||    
T  5448805 cctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 4122615 - 4122747
Alignment:
Q  126 cattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactt 225  Q
    |||||||| || ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| ||||||||    
T  4122615 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactt 4122714  T
Q  226 tgttacaaggttctatacttgatactactctct 258  Q
    ||| || |||||| ||| ||||||| |||||||    
T  4122715 tgtcaccaggttccatatttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 25569217 - 25569036
Alignment:
Q  76 attcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgt 175  Q
    |||||| |||||||||| || | |||||| |||||||||||  |  ||||| |||||||||  |||| |  ||| ||||||| |||||||||||||||||    
T  25569217 attcattttcatcaccaataaaaacaatagcattttcttctgatgtttgactttgctccattatttcgccaattagttcatcgtatacgagataaactgt 25569118  T
Q  176 tgttttcttcacaatgaaaccgttg---tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||| ||||||||  |||||| |      ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  25569117 tgtattcttcactttgaaactgcgccactcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactact 25569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 4132577 - 4132719
Alignment:
Q  114 tcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaa 213  Q
    |||||| | ||||||||| ||| ||||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||    
T  4132577 tcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aa 4132673  T
Q  214 caacctccactttgttacaaggttctatacttgatactactctctg 259  Q
    ||| ||| ||||||| || |||||| ||| ||||||||||||||||    
T  4132674 caatctcgactttgtcaccaggttccatatttgatactactctctg 4132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 4319296 - 4319406
Alignment:
Q  149 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 248  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||||| |||||| |||| || |||||| ||| ||| |    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgtt 4319395  T
Q  249 actactctctg 259  Q
    || ||||||||    
T  4319396 acaactctctg 4319406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 7884147 - 7884193
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaa 193  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  7884147 attggttcatcatagacaagataaattgttgttttcttcacaatgaa 7884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4346666 - 4346621
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatga 192  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4346666 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4362855 - 4362810
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatga 192  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4362855 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 47985393 - 47985496
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  255 ctct 258  Q
    ||||    
T  47985493 ctct 47985496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 48003967 - 48004070
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  255 ctct 258  Q
    ||||    
T  48004067 ctct 48004070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 47994680 - 47994783
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  255 ctct 258  Q
    ||||    
T  47994780 ctct 47994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 48013252 - 48013355
Alignment:
Q  155 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 254  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  255 ctct 258  Q
    ||||    
T  48013352 ctct 48013355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 36212913 - 36213031
Alignment:
Q  147 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 246  Q
    |||||||||||||| | ||||||||  | ||| |||||||||||||||  ||| |||||||||  ||||||||||| ||| | || ||||||||||||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttg 36213012  T
Q  247 atactactctctgtccctc 265  Q
    |||||| |||||| |||||    
T  36213013 atactaatctctgcccctc 36213031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  156 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 252  Q
    |||||||  ||||||| ||||||||  ||| ||||||||||||   ||||||||  |||||||||||||||||| |  ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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