View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_110 (Length: 280)

Name: NF6863A_low_110
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_110
NF6863A_low_110
[»] chr5 (9 HSPs)
chr5 (39-274)||(26099214-26099449)
chr5 (216-265)||(25224814-25224863)
chr5 (216-265)||(25288970-25289019)
chr5 (72-160)||(25224928-25225016)
chr5 (72-160)||(25289084-25289172)
chr5 (72-160)||(25728232-25728320)
chr5 (216-265)||(25728385-25728434)
chr5 (78-151)||(25222582-25222655)
chr5 (78-151)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (72-160)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 26099214 - 26099449
Alignment:
Q  39 ggaggaggttcgtgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacgg 138  Q
    ||||||| ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  26099214 ggaggagcttcttgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacgg 26099313  T
Q  139 ctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaac 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26099314 ctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaac 26099413  T
Q  239 tttagaatgtatcttcggaatcttgactgaggctcc 274  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26099414 tttagaatgtagcttcggaatcttgactgaggctcc 26099449  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
Q  216 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 265  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25224863 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25224814  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
Q  216 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 265  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25289019 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25288970  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
Q  72 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 160  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25225016 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25224928  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
Q  72 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 160  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25289172 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25289084  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
Q  72 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 160  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25728232 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25728320  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
Q  216 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 265  Q
    |||||| |||||||||||||||||||||| || ||||| |||||||||||    
T  25728385 tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac 25728434  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
Q  78 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 151  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25222582 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25222655  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
Q  78 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 151  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25286738 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25286811  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
Q  72 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 160  Q
    ||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| ||||  ||||||||||| | ||||||    
T  25618132 gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga 25618044  T

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