View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_113 (Length: 278)
Name: NF6863A_low_113
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_113 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 28609207 - 28608947
Alignment:
| Q |
14 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
113 |
Q |
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| T |
28609207 |
atggacatcaacttctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctca |
28609108 |
T |
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| Q |
114 |
ctatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagtt |
213 |
Q |
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| T |
28609107 |
ctatccattacaatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagtt |
28609008 |
T |
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| Q |
214 |
gggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacc |
274 |
Q |
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| T |
28609007 |
gggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacc |
28608947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 437697 - 437957
Alignment:
| Q |
14 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||| || |||||| |
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| T |
437697 |
atggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctca |
437796 |
T |
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| Q |
114 |
ctatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagtt |
213 |
Q |
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| T |
437797 |
ctatccattacaatagatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataatt |
437896 |
T |
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| Q |
214 |
gggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacc |
274 |
Q |
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| T |
437897 |
gggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggacc |
437957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 13660578 - 13660453
Alignment:
| Q |
14 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
113 |
Q |
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|||||||||||| || ||||| ||||||||||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |
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| T |
13660578 |
atggacatcaacctccgaatatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctca |
13660479 |
T |
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| Q |
114 |
ctatccattaccatagataatatgcc |
139 |
Q |
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| T |
13660478 |
ttatccattacaacagataatatgcc |
13660453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 13653078 - 13652957
Alignment:
| Q |
14 |
atggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctca |
113 |
Q |
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|||||||||||| |||||||| |||||| |||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |
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| T |
13653078 |
atggacatcaacctctgaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctca |
13652979 |
T |
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| Q |
114 |
ctatccattaccatagataata |
135 |
Q |
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| T |
13652978 |
ttatccattacaacagataata |
13652957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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