View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_122 (Length: 274)

Name: NF6863A_low_122
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_122
NF6863A_low_122
[»] chr3 (9 HSPs)
chr3 (12-274)||(24370425-24370687)
chr3 (128-249)||(24363972-24364093)
chr3 (158-267)||(24362870-24362979)
chr3 (165-267)||(24356025-24356127)
chr3 (182-267)||(24346918-24347003)
chr3 (141-227)||(24352660-24352746)
chr3 (167-258)||(24359363-24359454)
chr3 (158-225)||(24314062-24314129)
chr3 (14-76)||(24363889-24363951)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 24370687 - 24370425
Alignment:
Q  12 accatagacatttccttcaaaatatttcaaaatgaagttcatctacaaccaaaggtgaaggttattacgtcactcaacctaattgatggaaaggaaagtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  24370687 accatagacatttccttcaaaatatttcaaaatgaagttcagctacaaccaaaggtgaaggttattacttcactcaacctatttgatggaaaggaaagtt 24370588  T
Q  112 taacttggtttaagctacaacaatgtcctaaacagatgcataaactctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  24370587 taacttggtttaagctacaacaatgtcctaaacagatgcataaactctgtcactttagtaaacatgaattttaaaaaccaaatctttcttgtttatcaat 24370488  T
Q  212 ccaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtaccagcccgcg 274  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24370487 tcaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtaccagcccgcg 24370425  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 24363972 - 24364093
Alignment:
Q  128 acaacaatgtcctaaacagatgcataaactctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacat 227  Q
    |||||||| ||  ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24363972 acaacaatctctaaaacagacgcataaactctgtcactttagtaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacat 24364071  T
Q  228 ctcctgatttcagtccactttc 249  Q
    ||||||||||||||||||||||    
T  24364072 ctcctgatttcagtccactttc 24364093  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 24362979 - 24362870
Alignment:
Q  158 ctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacatctcctgatttcagtccactttctcttgcaa 257  Q
    ||||| ||||| |||||||||| ||||||||| ||||||| ||||||| ||| | ||||||||||||||||||| |||| |||||||||||| |||||||    
T  24362979 ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtttgtcagttcaaagacacaaacatctcccgattgcagtccactttcacttgcaa 24362880  T
Q  258 ataagtacca 267  Q
    | ||| ||||    
T  24362879 acaaggacca 24362870  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 24356127 - 24356025
Alignment:
Q  165 tttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagta 264  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||| | | ||||||||||||| ||||  || ||||||||||||||||||||| ||| |    
T  24356127 tttagaaaacatgaactttaaaaactaaaccttccttgtttatcagttcgaagacacaaacatttccttgttgcagtccactttctcttgcaaacaagga 24356028  T
Q  265 cca 267  Q
    |||    
T  24356027 cca 24356025  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 24347003 - 24346918
Alignment:
Q  182 ttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacatctcctgatttcagtccactttctcttgcaaataagtacca 267  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||    
T  24347003 ttaaaaaccaaatccttcttgtttatcagttcaaagacacaaacatctcctgcttgcagtccactttctctagcaaacaaggacca 24346918  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 24352746 - 24352660
Alignment:
Q  141 aaacagatgcataaactctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacat 227  Q
    |||||||| ||| ||||||||  |||||||||||||||||||||||||| |||| || ||||||||||| | |||||||||||||||    
T  24352746 aaacagatacatcaactctgttcctttagaaaacatgaactttaaaaactaaattttccttgtttatcagttcaaagacacaaacat 24352660  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 24359454 - 24359363
Alignment:
Q  167 tagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaacatctcctgatttcagtccactttctcttgcaaa 258  Q
    ||||||| ||||||||||||||| ||||||| ||||||||| |   |||||||||||||||||||   ||| ||||||||||| ||||||||    
T  24359454 tagaaaatatgaactttaaaaactaaatcttccttgtttatgagctcaaagacacaaacatctccatgttttagtccactttcacttgcaaa 24359363  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 24314129 - 24314062
Alignment:
Q  158 ctgtcactttagaaaacatgaactttaaaaaccaaatctttcttgtttatcaatccaaagacacaaac 225  Q
    |||||||||| |  || |||||| |||||||||||||| ||||||||||||| | |||||||||||||    
T  24314129 ctgtcacttttggtaatatgaacattaaaaaccaaatccttcttgtttatcagttcaaagacacaaac 24314062  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 24363889 - 24363951
Alignment:
Q  14 catagacatttccttcaaaatatttcaaaatgaagttcatctacaaccaaaggtgaaggttat 76  Q
    |||||| |||||||||||||||||||||| | || | || ||||||||||| |||||| ||||    
T  24363889 catagatatttccttcaaaatatttcaaacttaaatacaactacaaccaaatgtgaagattat 24363951  T

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