View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_124 (Length: 273)
Name: NF6863A_low_124
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_124 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 56045304 - 56045570
Alignment:
| Q |
1 |
atcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttg |
100 |
Q |
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| T |
56045304 |
atcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttg |
56045403 |
T |
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| Q |
101 |
ttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgc |
200 |
Q |
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| T |
56045404 |
ttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgc |
56045503 |
T |
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| Q |
201 |
taggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
267 |
Q |
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| T |
56045504 |
taggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
56045570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 248
Target Start/End: Original strand, 55706814 - 55707012
Alignment:
| Q |
52 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
151 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
152 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggaca |
248 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggaca |
55707012 |
T |
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