View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_130 (Length: 270)
Name: NF6863A_low_130
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_130 |
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| [»] chr3 (4 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 9763968 - 9763715
Alignment:
| Q |
23 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattgttgatctaa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9763968 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattattgatctaa |
9763869 |
T |
|
| Q |
123 |
tctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
216 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9763868 |
tctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
9763769 |
T |
|
| Q |
217 |
agtaccgctaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9763768 |
agtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
9763715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 9778421 - 9778168
Alignment:
| Q |
23 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattgttgatctaa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9778421 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattattgatctaa |
9778322 |
T |
|
| Q |
123 |
tctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9778321 |
tctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
9778222 |
T |
|
| Q |
217 |
agtaccgctaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
9778221 |
agtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
9778168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 9770108 - 9769855
Alignment:
| Q |
23 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattgttgatctaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9770108 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattattgatctaa |
9770009 |
T |
|
| Q |
123 |
tctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9770008 |
tctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggttctgctgcaaacaatccaaaggacaacgttggc |
9769909 |
T |
|
| Q |
217 |
agtaccgctaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9769908 |
agtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
9769855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 9784126 - 9783873
Alignment:
| Q |
23 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattgttgatctaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9784126 |
gagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgtttattattgatctaa |
9784027 |
T |
|
| Q |
123 |
tctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggc |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9784026 |
tctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggttctgctgcaaacaatccaaaggacaacgttggc |
9783927 |
T |
|
| Q |
217 |
agtaccgctaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9783926 |
agtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
9783873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 49058424 - 49058658
Alignment:
| Q |
44 |
tatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgtttattgttgatctaat-----ctaattatatttct |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||| |
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| T |
49058424 |
tatataaagacacaactagctgcttaatttattattcataccctcccttgaa-cacaaaccttgttttttattgatctaatataatctaattatatttct |
49058522 |
T |
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| Q |
138 |
ttgatcattttgaactatggacggcaaaggaaatggcaatgttgg---tgctgctgcaaacaatccaaaggacaacgttggcagtaccgctaaggttgat |
234 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
49058523 |
gtgaacattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgctgcaaacaatcccaaggacaacgttggcagtaccactaagggtgat |
49058622 |
T |
|
| Q |
235 |
ccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
49058623 |
acaatgaaagctcctggtggaaatggatccaacatt |
49058658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 4569192 - 4569430
Alignment:
| Q |
37 |
aatgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgt-ttattgttgatctaatctaattatatt |
134 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| ||||||||| | || || ||||||| || || |||||| |
|
|
| T |
4569192 |
aatgttctatataaagccataactagctgctcaatttcttatccataccctcccttgaaaaacaaaccttttctttttattgatcttat-ta--tatatt |
4569288 |
T |
|
| Q |
135 |
tctttgatcattttgaactatggacggcaaagga---aatggcaatgt---tggtgctgctgcaaacaatccaaaggacaacgttggcagtaccgctaag |
228 |
Q |
| |
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||| ||| |||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||||||| || ||||| ||||| | ||| |||| |
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| T |
4569289 |
tctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaa |
4569388 |
T |
|
| Q |
229 |
gttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
|
| |||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
4569389 |
ggtgatacaatgaaagctcctggtggagatggatcaaacatt |
4569430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 14704342 - 14704580
Alignment:
| Q |
37 |
aatgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgt-ttattgttgatctaatctaattatatt |
134 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||||| ||||||||| | || || ||||||| || || |||||| |
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|
| T |
14704342 |
aatgttctatataaagccataactagctgctcaattttttatccataccctcccttgaaaaacaaaccttttctttttattgatcttat-ta--tatatt |
14704438 |
T |
|
| Q |
135 |
tctttgatcattttgaactatggacggcaaagga---aatggcaatgt---tggtgctgctgcaaacaatccaaaggacaacgttggcagtaccgctaag |
228 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||| ||| ||||||| |||||| || ||||||||||| || ||||| ||||| | ||| |||| |
|
|
| T |
14704439 |
tctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaa |
14704538 |
T |
|
| Q |
229 |
gttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
|
| |||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
14704539 |
ggtgatacaatgaaagctcctggtggagatggatcaaacatt |
14704580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 49042562 - 49042810
Alignment:
| Q |
37 |
aatgttctatataaagacacaactagctgctcaatttcttattcatacccccc--------ttgaaacacaaaccttgtttattgttgatctaatctaat |
128 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| ||||||| || |||||||||||||||||||| || || || | |||| || |
|
|
| T |
49042562 |
aatgttctatataaagccataactagctgctcaatttcttatccataccctcccttgaaagttgaaacacaaaccttgttttttttt-at-tgatcttat |
49042659 |
T |
|
| Q |
129 |
tata---tttctttgatcattttgaactatggacggcaaagga---aatggcaatgt---tggtgctgctgcaaacaatccaaaggacaacgttggcagt |
219 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||| ||| ||||||| ||||| ||| ||||||||||| || ||||| ||||| | |
|
|
| T |
49042660 |
tatagtatttctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtggtgcagcaaacaatcccaaagacaatgttggtgct |
49042759 |
T |
|
| Q |
220 |
accgctaaggttgatccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
|
|| |||| | |||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
49042760 |
actactaaaggtgatacaatgaaagctcctggtggagatggatccaacatt |
49042810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 22642859 - 22642996
Alignment:
| Q |
133 |
tttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggcagtaccgctaaggttg |
232 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||| |||| | || |
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|
| T |
22642859 |
tttctttgatcattttgaactatggacaacaaaggaaatgacaataatggtgctgctgcaaacaatgccaaggacaacgttggcagtaccactaaaggtg |
22642958 |
T |
|
| Q |
233 |
atccaatgaaagcacctggaggagatggatccaacatt |
270 |
Q |
| |
|
|| | |||||||| ||||| | |||||||||||||||| |
|
|
| T |
22642959 |
atacgatgaaagctcctggtgaagatggatccaacatt |
22642996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 22642789 - 22642860
Alignment:
| Q |
39 |
tgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22642789 |
tgttctatataaagacacaactagctgctcggtttcttattcataccctcccttgaaacacaaaccttgttt |
22642860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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