View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_131 (Length: 269)
Name: NF6863A_low_131
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_131 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 9763495 - 9763739
Alignment:
| Q |
24 |
agatcagcagtgcgggtaatgtaggaaacaaacttagagattaattattatttattccttagcacatgacaaaatatattctacagaacatataaaacca |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763495 |
agatcagcagtgcaggtaatgtaggaaacaaacttagagattaattcttatttattccttaacacatgacaaaatatattctacagaacatataaaacca |
9763594 |
T |
|
| Q |
124 |
tagccataacattattnnnnnnnggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatt |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763595 |
tagccataacattattaaaaaa-ggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatt |
9763693 |
T |
|
| Q |
224 |
tttctcaaattcctcccttgaaatgttggatccatctcctccaggt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763694 |
tttctcaaattcctcccttgaaatgttggatccatctcctccaggt |
9763739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 9777944 - 9778192
Alignment:
| Q |
24 |
agatcagcagtgcgggtaatgtaggaaacaaacttagagattaattattatttattccttagcacatgacaaaatatat----tctacagaacatataaa |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9777944 |
agatcagcagtgcaggtaatgtaggaaacaaacttagagattaattattatttattccttagcacatgacaaaatatatatattctacagaacatataaa |
9778043 |
T |
|
| Q |
120 |
accatagccataacattattnnnnnnnggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttag |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778044 |
accatagccataacattattaaaaaa-ggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttag |
9778142 |
T |
|
| Q |
220 |
gatttttctcaaattcctcccttgaaatgttggatccatctcctccaggt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778143 |
gatttttctcaaattcctcccttgaaatgttggatccatctcctccaggt |
9778192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 9783673 - 9783897
Alignment:
| Q |
50 |
aacaaacttagagattaattattatttattccttagcacatgacaaaatatat----tctacagaacatataaaaccatagccataacattattnnnnnn |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
9783673 |
aacaaacttagagattaattattatttattccttagcacatgacaaaatatatatattctatagaacatataaaaccatagccataacaatattaaaaaa |
9783772 |
T |
|
| Q |
146 |
n-ggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttga |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9783773 |
aaggaaataaactagctagctaattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttga |
9783872 |
T |
|
| Q |
245 |
aatgttggatccatctcctccaggt |
269 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9783873 |
aatgttggatccatctcctccaggt |
9783897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 54 - 269
Target Start/End: Original strand, 9769659 - 9769879
Alignment:
| Q |
54 |
aacttagagattaattattatttattccttagcacatgacaaaatatat----tctacagaacatataaaaccatagccataacattattnnnnnnn-gg |
148 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| || |
|
|
| T |
9769659 |
aactttgagattaattcttatttattccttagcacatgacaaaatatatatattctatagaacatataaaaccatagccataacaatattaaaaaaaagg |
9769758 |
T |
|
| Q |
149 |
aaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatg |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9769759 |
aaataaactagctagctaattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatg |
9769858 |
T |
|
| Q |
249 |
ttggatccatctcctccaggt |
269 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9769859 |
ttggatccatctcctccaggt |
9769879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 4569616 - 4569407
Alignment:
| Q |
58 |
tagagattaattattatttattccttagcacatgacaaaatatattctacagaacatataaaaccatagccataacattattnnnnnnnggaaataaact |
157 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||| | ||||||||| | |||| |||| |
|
|
| T |
4569616 |
tagagattaattcttattccttccttatcacatgacaatatatattctacagaacatataataccatagcaagaacattattagaaaaag-aaattaact |
4569518 |
T |
|
| Q |
158 |
agctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatcca |
257 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
4569517 |
agctagctaattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatcca |
4569418 |
T |
|
| Q |
258 |
tctcctccagg |
268 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4569417 |
tctccaccagg |
4569407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 14704766 - 14704557
Alignment:
| Q |
58 |
tagagattaattattatttattccttagcacatgacaaaatatattctacagaacatataaaaccatagccataacattattnnnnnnnggaaataaact |
157 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||| | ||||||||| | |||| |||| |
|
|
| T |
14704766 |
tagagattaattcttattccttccttatcacatgacaatatatattctacagaacatataataccatagcaagaacattattagaaaaag-aaattaact |
14704668 |
T |
|
| Q |
158 |
agctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatcca |
257 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
14704667 |
agctagctaattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggacttttctcaaattgctcccttgaaatgtttgatcca |
14704568 |
T |
|
| Q |
258 |
tctcctccagg |
268 |
Q |
| |
|
||||| ||||| |
|
|
| T |
14704567 |
tctccaccagg |
14704557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 268
Target Start/End: Complemental strand, 49058835 - 49058635
Alignment:
| Q |
66 |
aattattatttattccttagcacatgacaaaatatattctacagaacatataaaaccatagccataacattattnnnnnnnggaaataaactagctagct |
165 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| | |||| ||||||| |||| |
|
|
| T |
49058835 |
aattcttatttattccttagcacatgacaaaatatattctacagaacatataataccatagcaagaacattattagaaaaag-aaattaactagc-agct |
49058738 |
T |
|
| Q |
166 |
aattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctcc |
265 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||| | || |||||| |||||||||||||||||||||||||||||| ||| || |
|
|
| T |
49058737 |
aattcttcttgttatctttttgagcagtatgcaaatcagcaaaatagccttgtgggtttttcacaaattcctcccttgaaatgttggatccatttccacc |
49058638 |
T |
|
| Q |
266 |
agg |
268 |
Q |
| |
|
||| |
|
|
| T |
49058637 |
agg |
49058635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 49043007 - 49042787
Alignment:
| Q |
51 |
acaaacttagagattaattattatttattccttagca------catgacaaaatatattctacagaacatataaaaccatagccataacattattnnnnn |
144 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
49043007 |
acaaacttaaagattaattcttatttattccttagcagtagcacatgacaaaatat--tcttcagaacatataacaccatagccataacattattagaaa |
49042910 |
T |
|
| Q |
145 |
nnggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttga |
244 |
Q |
| |
|
||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
49042909 |
a-ggaaactaagtagctagctagttcttcttactatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaaattcctcccttga |
49042811 |
T |
|
| Q |
245 |
aatgttggatccatctcctccagg |
268 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
49042810 |
aatgttggatccatctccaccagg |
49042787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 49064290 - 49064237
Alignment:
| Q |
61 |
agattaattattatttattccttagcacatgacaaaatatattctacagaacatat |
116 |
Q |
| |
|
||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||| |
|
|
| T |
49064290 |
agattaatttttatttattccttaacacctggcaa--tatattctacagaacatat |
49064237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 45 - 260
Target Start/End: Complemental strand, 22643196 - 22642981
Alignment:
| Q |
45 |
taggaaacaaacttagagattaattattatttattccttagcacatgacaaaatatattctacagaacatataaaaccatagccataa-cattattnnnn |
143 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||| |
|
|
| T |
22643196 |
taggaaacaaacttaaaatgtaattcttatttattccttagcacatgacaaaatatattctacagaacatataataccatagcaagaaacattattggaa |
22643097 |
T |
|
| Q |
144 |
nnnggaaataaactagctagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttg |
243 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
22643096 |
aaag-aaattaactagttagctaattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtggatttttctcaaattgctcccttg |
22642998 |
T |
|
| Q |
244 |
aaatgttggatccatct |
260 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22642997 |
aaatgttggatccatct |
22642981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University