View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_137 (Length: 265)
Name: NF6863A_low_137
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_137 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 3131 - 3374
Alignment:
| Q |
7 |
tctttcagttaggaggacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3131 |
tctttcagttaggaagacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
3230 |
T |
|
| Q |
107 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3231 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
3330 |
T |
|
| Q |
207 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
3374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 3131 - 3374
Alignment:
| Q |
7 |
tctttcagttaggaggacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3131 |
tctttcagttaggaagacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
3230 |
T |
|
| Q |
107 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3231 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
3330 |
T |
|
| Q |
207 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
3374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 44371721 - 44371478
Alignment:
| Q |
7 |
tctttcagttaggaggacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371721 |
tctttcagttaggaagacaaaataatagttagcagataagataacagaaaccatttttaacaaatcatcaaattatagagcataaaaaattgccagcatt |
44371622 |
T |
|
| Q |
107 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371621 |
tgttgatccattgtccaacacattgatttgaccaaagattttgctttgcaaattggacacatgaatccaacagaattttattgtatgttagaatcaactt |
44371522 |
T |
|
| Q |
207 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371521 |
gttaaactctattctgcaccatagacatgcgattgtgagctgat |
44371478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 1739001 - 1739161
Alignment:
| Q |
98 |
gccagcatttgttgatccattgtccaacacattgatttgaccaaaga-ttttgctttgcaaattggacacatgaatccaacagaattttattgtatgtta |
196 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||| | ||||||| | | |
|
|
| T |
1739001 |
gccagcatttggtgatccactgtccaacacattgatttgaccagagatttttgccttgcaaactggacacatgaatccaacagaatctgattgtatttca |
1739100 |
T |
|
| Q |
197 |
gaatcaac-------ttgttaaactctattctgcaccatagacatgcgattgtgagctgat |
250 |
Q |
| |
|
|||| ||| | |||||||||||||| ||||||| ||||| | |||||||||||| |
|
|
| T |
1739101 |
gaattaacagcatcatggttaaactctattccacaccatacacatgtggttgtgagctgat |
1739161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 1727038 - 1727133
Alignment:
| Q |
98 |
gccagcatttgttgatccattgtccaacacattgatttgaccaaagat-tttgctttgcaaattggacacatgaatccaacagaattttattgtat |
192 |
Q |
| |
|
||||| ||||| ||||||| | |||||||||||||||||| || |||| ||||| ||||||| ||||||| | ||||||||||||||| ||||||| |
|
|
| T |
1727038 |
gccagtatttggtgatccactctccaacacattgatttgatcatagatatttgccttgcaaactggacacgttaatccaacagaatttgattgtat |
1727133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 25088788 - 25088848
Alignment:
| Q |
122 |
caacacattgatttgaccaaagatttt-gctttgcaaattggacacatgaatccaacagaa |
181 |
Q |
| |
|
|||||||||| |||||||| | ||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25088788 |
caacacattgctttgaccagatatttttgctttgcaaattggacacatgaatccagcagaa |
25088848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University