View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_14 (Length: 439)

Name: NF6863A_low_14
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_14
NF6863A_low_14
[»] chr3 (14 HSPs)
chr3 (6-433)||(5484450-5484875)
chr3 (6-251)||(5525676-5525919)
chr3 (6-191)||(5828158-5828344)
chr3 (6-193)||(5502897-5503082)
chr3 (9-193)||(5490083-5490266)
chr3 (6-191)||(5454907-5455092)
chr3 (6-189)||(20343528-20343712)
chr3 (22-193)||(5446346-5446517)
chr3 (22-169)||(5854204-5854351)
chr3 (6-122)||(5848887-5849003)
chr3 (10-123)||(5802494-5802607)
chr3 (245-309)||(5525588-5525652)
chr3 (371-431)||(5525497-5525557)
chr3 (365-433)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (22-193)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 5484875 - 5484450
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| |||||||||||||||||||||    
T  5484875 cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct 5484776  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  5484775 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggt 5484678  T
Q  206 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484677 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 5484578  T
Q  306 acataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactac 405  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  5484577 acataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctac 5484478  T
Q  406 agatcatataaagaatacgagaaacttg 433  Q
    ||||||||||||||||||||||||||||    
T  5484477 agatcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 5525919 - 5525676
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  ||||||||    
T  5525919 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct 5525820  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggt 205  Q
    ||||||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| ||||||||||||||||||||||||||||     
T  5525819 tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggc 5525722  T
Q  206 actgataccttaactgtttaattaataggaaaagattacaaaacat 251  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5525721 actgctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 5828158 - 5828344
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5828158 cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct 5828257  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 191  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828258 tccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 5503082 - 5502897
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  5503082 cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct 5502983  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 193  Q
    ||||| |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502982 tcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 5490266 - 5490083
Alignment:
Q  9 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 108  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5490266 agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5490167  T
Q  109 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 193  Q
    ||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490166 gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 5455092 - 5454907
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    |||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||    
T  5455092 cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct 5454993  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 191  Q
    |||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454992 tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 20343712 - 20343528
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| ||||||    
T  20343712 cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct 20343613  T
Q  106 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 189  Q
    |||||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343612 tcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  22 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 121  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  122 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 193  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 5854204 - 5854351
Alignment:
Q  22 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 121  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  122 tcatttccaaagacatattttatctcttcagtcagatatattgcacaa 169  Q
     ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854304 acatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 5848887 - 5849003
Alignment:
Q  6 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 105  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5848887 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct 5848986  T
Q  106 tcagaacttggtatttt 122  Q
    |||||||| ||||||||    
T  5848987 tcagaactcggtatttt 5849003  T

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Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  10 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 109  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  110 aacttggtattttc 123  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  245 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 309  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  371 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 431  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 433
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  365 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 433  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  22 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 121  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  122 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 193  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

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