View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_150 (Length: 259)
Name: NF6863A_low_150
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_150 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 5251170 - 5251406
Alignment:
| Q |
6 |
tttggtgttgatgttggattttatatataaaatgtttctttgctgaaagcacaaaaaacaagtgttacagcataagaatagtggtttttgtcnnnnnnnn |
105 |
Q |
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| T |
5251170 |
tttggtgttgatgttggattttatatataaaatgtttctttgcagaaagcacaaaaaacaagtgttacaacataagaatagtggtttttg-ataaaaaat |
5251268 |
T |
|
| Q |
106 |
nnnnnnnnncataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5251269 |
aataaaataaataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaa----------ataatgcaaacaattttaacaaacaggttc |
5251358 |
T |
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| Q |
206 |
atccatgataattttaaaacaatcgnnnnnnntatacaaaggaatgaa |
253 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5251359 |
atccatgataattttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
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