View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_154 (Length: 257)
Name: NF6863A_low_154
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 1045595 - 1045813
Alignment:
| Q |
1 |
tcactatacggtacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgtaatcacgttttgtgctcctaatttttt |
100 |
Q |
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| T |
1045595 |
tcactataaggtacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgt-------------gctcctaatttttt |
1045681 |
T |
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| Q |
101 |
caatttatcttgttatttgttatttttggcaaacattctgtgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtttgtttaagg |
200 |
Q |
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| T |
1045682 |
caatttatcttgttatctgttatttttggcaaacattctgtg--tgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtttgtttaagg |
1045779 |
T |
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| Q |
201 |
agttgatatgacttgaattgtggctataacttat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1045780 |
agttgatatgacttgaattgtggctataacttat |
1045813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1039305 - 1039345
Alignment:
| Q |
1 |
tcactatacggtacgatcttttcttcactgtttgaatctat |
41 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| |
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| T |
1039305 |
tcacgatacggtacgttcttttcttcactgtttgaatctat |
1039345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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