View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_173 (Length: 250)
Name: NF6863A_low_173
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_173 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 34691012 - 34691247
Alignment:
| Q |
3 |
gtaacttactgttatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
102 |
Q |
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| T |
34691012 |
gtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
34691111 |
T |
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| Q |
103 |
agttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcgt |
202 |
Q |
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| T |
34691112 |
agttgtgtctgttaaatgcttttggaaagcttacaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcgt |
34691211 |
T |
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| Q |
203 |
gttctttggttgctaaaagacagatatcattatatt |
238 |
Q |
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| T |
34691212 |
gttctttggttgctaaaagacagatatcattgtatt |
34691247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 26988937 - 26989172
Alignment:
| Q |
3 |
gtaacttactgttatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
102 |
Q |
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| T |
26988937 |
gtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
26989036 |
T |
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| Q |
103 |
agttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcgt |
202 |
Q |
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| T |
26989037 |
agttgtgtctgttaaatgcttttggaaagtttgcaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcgt |
26989136 |
T |
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| Q |
203 |
gttctttggttgctaaaagacagatatcattatatt |
238 |
Q |
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| T |
26989137 |
gttctttggttgctaaaagacagatatcattgtatt |
26989172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 27028148 - 27028237
Alignment:
| Q |
54 |
ttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc---------agttgtgtctgttaaatgcttttggaaagctt |
134 |
Q |
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| T |
27028148 |
ttttgctgaaagcgtgaaatgctggcattatacagctttcttggtttgctagtgtcttagttatgtttgttaaatgcttttggaaagctt |
27028237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 27076220 - 27076180
Alignment:
| Q |
102 |
cagttgtgtctgttaaatgcttttggaaagcttacaacaag |
142 |
Q |
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| T |
27076220 |
cagttgtgtttgttaaatgcttttggaaagcttgcaacaag |
27076180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 27076303 - 27076251
Alignment:
| Q |
50 |
catcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
102 |
Q |
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| T |
27076303 |
catcttttgctgaaagcgtgaaacgcaggcattatacagctttcttggtttgc |
27076251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 27076156 - 27076108
Alignment:
| Q |
185 |
gaataaacattcgttcgtgttctttggttgctaaaagacagatatcatt |
233 |
Q |
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| T |
27076156 |
gaataaacagttgttcatgttatttggttgctaaaagacatatatcatt |
27076108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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